DL in life science
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木姑娘
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MIT-6874-Deep Learning in the Life Sciences Week 8
本节课将带来基因表达和剪切相关内容的学习,首先介绍了基因测序以及表达的基本概念,并粗浅的介绍了深度学习可以做的事提示以下是本篇文章正文内容,下面案例可供参考。原创 2022-07-16 15:27:22 · 305 阅读 · 1 评论 -
MIT-6874-Deep Learning in the Life Sciences Week 7
本节讨论的是深度学习的可解释性。模型本身意味着知识,可解释性对于如深度学习这样的“黑盒模型”而言,是解释其为何做出如此判断的原因和方法的根本所在,能够帮助模型朝着人类预期的方向工作。在许多场景,如推荐、医疗等场景有很大的应用前景。...原创 2022-07-03 19:54:28 · 391 阅读 · 0 评论 -
MIT-6874-Deep Learning in the Life Sciences Week6
本节课针对深度学习在调控基因组学(Regulatory Genomics)之中的应用进行讲述。首先介绍基因调控构建的基础模块,然后介绍了传统的基因调控以及主成分分析方法。随后介绍了CNN和DNN在调控基因组学的应用。还有客座教授分享了其将深度学习用于Hi-C looping之中的工作。...原创 2022-06-21 22:48:02 · 485 阅读 · 0 评论 -
MIT-6874-Deep Learning in the Life Sciences Week5
基因通过调控,表达不同的细胞类型,从而在人体内产生不同的器官。原创 2022-06-12 17:30:55 · 437 阅读 · 0 评论 -
MIT-6874-Deep Learning in the Life Sciences Week4
Recurrent Neural Networks LSTMs, Transformers, Graph Neural NetworksRecurrent Neural Networks (RNNs)Encoding timeRNNAlternative architectures for RNNsLSTMTransformerGNNGraph neural netsApplication to “classical” network problemsUnsupervised learning with G原创 2022-05-29 23:30:37 · 102 阅读 · 0 评论 -
MIT-6874-Deep Learning in the Life Sciences Week3
Convolutional Neural NetworksKey ingredients of a CNN如何使用卷积神经网络翻译像素的概念why pooling一些卷积过程中常见的实际问题汇总paddingstrideReal-world Feature Invariance: Data augmentationdifferent architecturesLeNetThe art of CNN training需要大量数据归一化问题梯度消失/爆炸问题小批量梯度下降训练中的优化问题参数tuning训练/验原创 2022-05-22 22:16:31 · 169 阅读 · 0 评论 -
MIT-6874-Deep Learning in the Life Sciences Week2
MIT-6874-Deep Learning in the Life Sciences Week2What is Machine LearningTraditional Neural NetworksHow can we use gradients for optimization?How can we use gradients to train a deep neural network?What performance metrics should we use?Improving generaliz原创 2022-05-08 10:59:40 · 423 阅读 · 0 评论 -
MIT-6874-Deep Learning in the Life Sciences Week1
MIT-6874-Deep Learning in the Life Sciences Week1Week1 IntroWhy deep learning in life scienceWhy computational BiologyIntro to Machine Learning==机器学习推理的基本理论:贝叶斯原理==Classification and clusteringIntro to GenomicsWhere to make in progress?Week1 IntroWhy de原创 2022-04-30 11:33:37 · 283 阅读 · 1 评论