Software for feature selection

Table 4. Software for feature selection

General purpose FS software WEKA Java Witten and Frank (2005) http://www.cs.waikato.ac.nz/ml/weka Fast Correlation Based Filter Java Yu and Liu (2004) http://www.public.asu.edu/~huanliu/FCBF/FCBFsoftware.html Feature Selection Book Ansi C Liu and Motoda (1998) http://www.public.asu.edu/~huanliu/Fsbook MLC++ C++ Kohavi et al. (1996) http://www.sgi.com/tech/mlc Spider Matlab – http://www.kyb.tuebingen.mpg.de/bs/people/spider SVM and Kernel Methods Matlab Canu et al. (2003) http://asi.insa-rouen.fr/~arakotom/toolbox/index Matlab Toolbox       Microarray analysis FS software SAM R, Excel Tusher et al. (2001) http://www-stat.stanford.edu/~tibs/SAM/ GALGO R Trevino and Falciani (2006) http://www.bip.bham.ac.uk/bioinf/galgo.html PCP C, C++ Buturovic (2005) http://pcp.sourceforge.net GA-KNN C Li et al. (2001) http://dir.niehs.nih.gov/microarray/datamining/ Rankgene C Su et al. (2003) http://genomics10.bu.edu/yangsu/rankgene/ EDGE R Leek et al. (2006) http://www.biostat.washington.edu/software/jstorey/edge/ GEPAS-Prophet Perl, C Medina et al. (2007) http://prophet.bioinfo.cipf.es/ DEDS (Bioconductor) R Yang et al. (2005) http://www.bioconductor.org/ RankProd (Bioconductor) R Breitling et al. (2004) http://www.bioconductor.org/ Limma (Bioconductor) R Smyth (2004) http://www.bioconductor.org/ Multtest (Bioconductor) R Dudoit et al. (2003) http://www.bioconductor.org/ Nudge (Bioconductor) R Dean and Raftery (2005) http://www.bioconductor.org/ Qvalue (Bioconductor) R Storey (2002) http://www.bioconductor.org/ twilight (Bioconductor) R Scheid and Spang (2005) http://www.bioconductor.org/ ComparativeMarkerSelection JAVA, R Gould et al. (2006) http://www.broad.mit.edu/genepattern (GenePattern)       Mass spectra analysis FS software GA-KNN C Li et al. (2004) http://dir.niehs.nih.gov/microarray/datamining/ R-SVM R, C, C++ Zhang et al. (2006) http://www.hsph.harvard.edu/bioinfocore/RSVMhome/ R-SVM.html SNP analysis FS software CHOISS C++, Perl Lee and Kang (2004) http://biochem.kaist.ac.kr/choiss.htm MLR-tagging C He and Zelikovsky (2006) http://alla.cs.gsu.ed/~software/tagging/tagging.html WCLUSTAG JAVA Sham et al. (2007) http://bioinfo.hku.hk/wclustag

 

原文：http://bioinformatics.oxfordjournals.org/cgi/content-nw/full/23/19/2507/T4