MATLAB读取hdf文件

目录

1. 显示hdf文件中的数据集以及属性等等信息

2. 读取hdf文件中的数据

3. 读取数据集的属性

4. 创建hdf文件

5. 往新建的hdf中写入数据

6. 给数据集写属性

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1. 显示hdf文件中的数据集以及属性等等信息

h5disp('文件名.hdf');

例如：

h5disp('dataset/sample_A_padded_20160501.hdf');

# 输出：
HDF5 sample_A_padded_20160501.hdf 
Group '/' 
    Attributes:
        'file_format':  '0.2'
    Group '/annotations' 
        Attributes:
            'offset':  1520.000000 3644.000000 3644.000000 
        Dataset 'ids' 
            Size:  432
            MaxSize:  432
            Datatype:   H5T_STD_U64LE (uint64)
            ChunkSize:  []
            Filters:  none
            FillValue:  0
        Dataset 'locations' 
            Size:  3x432
            MaxSize:  3x432
            Datatype:   H5T_IEEE_F32LE (single)
            ChunkSize:  []
            Filters:  none
            FillValue:  0.000000
        Dataset 'types' 
            Size:  432
            MaxSize:  432
            Datatype:   H5T_STRING
                String Length: variable
                Padding: H5T_STR_NULLTERM
                Character Set: H5T_CSET_UTF8
                Character Type: H5T_C_S1
            ChunkSize:  432
            Filters:  deflate(4)
        Group '/annotations/comments' 
            Dataset 'comments' 
                Size:  17
                MaxSize:  17
                Datatype:   H5T_STRING
                    String Length: variable
                    Padding: H5T_STR_NULLTERM
                    Character Set: H5T_CSET_UTF8
                    Character Type: H5T_C_S1
                ChunkSize:  []
                Filters:  none
            Dataset 'target_ids' 
                Size:  17
                MaxSize:  17
                Datatype:   H5T_STD_U64LE (uint64)
                ChunkSize:  []
                Filters:  none
                FillValue:  0
        Group '/annotations/presynaptic_site' 
            Dataset 'partners' 
                Size:  2x216
                MaxSize:  2x216
                Datatype:   H5T_STD_U64LE (uint64)
                ChunkSize:  []
                Filters:  none
                FillValue:  0
    Group '/volumes' 
        Dataset 'raw' 
            Size:  3072x3072x200
            MaxSize:  3072x3072x200
            Datatype:   H5T_STD_U8LE (uint8)
            ChunkSize:  192x96x7
            Filters:  deflate(4)
            Attributes:
                'resolution':  40.000000 4.000000 4.000000 
        Group '/volumes/labels' 
            Dataset 'clefts' 
                Size:  1250x1250x125
                MaxSize:  1250x1250x125
                Datatype:   H5T_STD_U64LE (uint64)
                ChunkSize:  79x79x4
                Filters:  deflate(4)
                Attributes:
                    'resolution':  40.000000 4.000000 4.000000 
                    'offset':  1520.000000 3644.000000 3644.000000 
            Dataset 'neuron_ids' 
                Size:  1250x1250x125
                MaxSize:  1250x1250x125
                Datatype:   H5T_STD_U64LE (uint64)
                ChunkSize:  79x79x4
                Filters:  deflate(4)
                Attributes:
                    'resolution':  40.000000 4.000000 4.000000 
                    'offset':  1520.000000 3644.000000 3644.000000 

 

2. 读取hdf文件中的数据

data = h5read('文件名.hdf', '数据集名');

例如：

raw = h5read('dataset/sample_A_padded_20160501.hdf', '/volumes/raw');

 

3. 读取数据集的属性

attribute = h5readatt('文件名.hdf', '数据集名', '属性名');

例如：

resolution = h5readatt('dataset/sample_A_padded_20160501.hdf', '/volumes/raw', 'resolution');

 

4. 创建hdf文件

h5create('文件名.hdf', '数据集名', 数据大小, 'Datatype',  '数据类型');

例如：

h5create('downs_dataset/downsample_A_padded_20160501.hdf', '/volumes/raw', size_downs_raw, 'Datatype',  'uint8');

 

5. 往新建的hdf中写入数据

h5write('文件名.hdf', '数据集名', 数据变量);

例如：

h5write('downs_dataset/downsample_A_padded_20160501.hdf', '/volumes/raw', downs_raw);

 

6. 给数据集写属性

h5writeatt('文件名.hdf', '数据集名', '属性名', 属性变量);

例如：

h5writeatt('downs_dataset/downsample_A_padded_20160501.hdf', '/volumes/raw', 'resolution', resolution);