neper安装

1.neper官网：Neper: Polycrystal Generation and Meshing — Neper 4.7.0 documentation

2.安装GSL和NLOPT两个软件

GSL：下载地址：http://mirrors.ustc.edu.cn/gnu/gsl/

        安装：(1) sudo ./configure (2)sudo make (3)sudo make install

 NLOPT: sudo apt-get install libnlopt.dev

3.进入neper文件的src文件中：

        a. 安装OpanMP: sudo apt-get install mpich

        b. mkdir Bulid

        c. cd Build

        d. cmake ..

        e. make

        f .sudo make install

4. 安装Gmsh: sudo apt-get install libgmsh-dev

5. 安装Pov-ray : sudo apt-get install povray

6.添加依赖：sudo apt-get install libnlopt0

现在就可以执行命令生成多晶结构了，但是在划分网格时会报错，所以还需要进一步安装Gmsh。

Installing Gmsh

We download the source code from the website 需要搭梯子(https://gmsh.info ), latest version. It is then a good idea to move it to ~/Progs, where Neper already is:

mv gmsh-4.11.1-source.tgz ~/Progs/

tar -zxf gmsh-4.11.1-source.tgz

cd ~/Progs/gmsh-4.11.1-source

We can then compile it. As Gmsh is also managed with CMake, installation is no much different from that of Neper itself:

mkdir build
cd build
cmake ..

-- The CXX compiler identification is GNU 11.3.0
-- The C compiler identification is GNU 11.3.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of size_t
-- Check size of size_t - done
-- Found 64Bit
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found OpenMP
-- Found Eigen[contrib]
-- Found Mesh
-- Found Solver
-- Found Post
-- Found Plugins
-- Found Parser
-- Could NOT find OpenGL (missing: OPENGL_opengl_LIBRARY OPENGL_glx_LIBRARY OPENGL_INCLUDE_DIR)
-- Could NOT find X11 (missing: X11_X11_INCLUDE_PATH X11_X11_LIB)
-- Could NOT find FLTK (missing: FLTK_LIBRARIES FLTK_INCLUDE_DIR)
-- Found ONELAB
-- Found ONELABMetamodel
-- Found ANN[contrib]
-- Found ALGLIB[contrib]
-- Found DIntegration
-- Found Kbipack
-- GMP not found: Kbipack uses long int
-- Found MathEx[contrib]
-- Found Metis[contrib]
-- Found TetGen/BR
-- Found Voro++[contrib]
-- Found OptHom
-- Found DomHex
-- Found QuadTri
-- Found Blossom
-- Found Netgen
-- Found Bamg
-- Found Hxt
-- Found QuadMeshingTools
-- Found WinslowUntangler
-- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "")
-- HDF5 not found
-- Found Gmm[contrib]
-- Could NOT find Freetype (missing: FREETYPE_LIBRARY FREETYPE_INCLUDE_DIRS)
-- Looking for vsnprintf
-- Looking for vsnprintf - found
-- Looking for sys/socket.h
-- Looking for sys/socket.h - found
-- Check size of socklen_t
-- Check size of socklen_t - done
-- Check size of intptr_t
-- Check size of intptr_t - done
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Found Dlopen
-- Looking for linux/joystick.h
-- Looking for linux/joystick.h - found
-- Found LinuxJoystick
-- Performing Test WALL
-- Performing Test WALL - Success
-- Performing Test WCAST
-- Performing Test WCAST - Failed
-- Performing Test WDEPREC
-- Performing Test WDEPREC - Success
-- Performing Test WIND
-- Performing Test WIND - Success
-- Performing Test WATTR
-- Performing Test WATTR - Success
-- Performing Test NOWARN
-- Performing Test NOWARN - Success
-- Performing Test NOOPT
-- Performing Test NOOPT - Success
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/api/square.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/baffles.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/boolean.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/chamfer.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/coherence.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/compsolid.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/compsolid2.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/extend_field.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/extrude.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/extrude2.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fillet.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fillet2.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fillet3.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fillet4.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fillet_chamfer.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fleur.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/fragment_numbering.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/hybrid_occ_builtin.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/hyperboloid.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/import.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/import2.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/intersect_line_volume.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/neuron.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/number_of_tets.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/periodic.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/periodic_embedded.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/pipe.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/primitives.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/revolve.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/revolve2.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/shell_sewing.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple2.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple3.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple4.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple5.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple6.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/simple7.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/slicer.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/slicer_surfaces.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/spherical_surf.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/spline.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/step_assembly.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/surface_filling.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/thicksolid.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/thrusections.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/transfinite.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/transform.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/boolean/twist.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/examples/post_processing/compute_area_volume.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/tutorials/t16.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/tutorials/t17.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/tutorials/t18.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/tutorials/t19.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/tutorials/t20.geo
Skipping test /home/rquey/Progs/gmsh-4.11.1-source/tutorials/t21.geo
--
-- Gmsh 4.11.1 has been configured for Linux64
--
--  * Build options: 64Bit ALGLIB[contrib] ANN[contrib] Bamg Blossom DIntegration Dlopen DomHex Eigen[contrib] Gmm[contrib] Hxt Kbipack LinuxJoystick MathEx[contrib] Mesh Metis[contrib] Netgen ONELAB ONELABMetamodel OpenMP OptHom Parser Plugins Post QuadMeshingTools QuadTri Solver TetGen/BR Voro++[contrib] WinslowUntangler
--  * Build type: RelWithDebInfo
--  * C compiler: /usr/bin/cc
--  * C++ compiler: /usr/bin/c++
--  * Install prefix: /usr/local
--
-- Configuring done
-- Generating done
-- Build files have been written to: /home/rquey/Progs/gmsh-4.11.1-source/build

Configuration completed and is sufficient for Neper. So, we can make and install:

make
sudo make install

The second command copies the gmsh binary file to a system location, which makes the command available to Neper.

Back to Neper’s build directory, we re-run the tests:

cd ~/Progs/neper-4.6.1/src/build
ctest

99% tests passed, 2 tests failed out of 461

Total Test time (real) =  47.92 sec

The following tests FAILED:
        211 - V/asymptote (Failed)
        325 - V/povray (Failed)
Errors while running CTest

All “M” tests now pass.

现在执行以下命令测试一下效果吧：

neper -T -n 100

neper -V n100-id1.tess -print img1

neper -M n100-id1.tess

neper -V n100-id1.tess,n100-id1.msh -print img2