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ROC曲线
rm(list=ls())library(dplyr)library(survivalROC)library(rbsurv)library(parallel)#detectCores()检查当前电脑可用核数cl.cores <- detectCores()cl <- makeCluster(24)registerDoParallel(cl)dim(cox_hcc_me...原创 2018-08-08 12:28:05 · 1405 阅读 · 0 评论 -
TCGAbiolinks下载临床数据报错
query <- GDCquery(project = "TCGA-GBM", data.category = "Clinical", barcode = c("TCGA-08-0516","TCGA-02-0317")) GDCdownload(query)clinical <- GDCprepare_cli...原创 2018-08-03 13:46:53 · 3003 阅读 · 0 评论 -
单因素cox
outsur <- coxph(Surv(Time,Status)~age, data=hcc_risk_clinical_validate)forest_model(outsur,factor_separate_line=F, format_options = list(colour= "black", shape = 16, ...原创 2018-08-12 12:34:09 · 1918 阅读 · 0 评论 -
森林图
d &lt;- c(NA,NA,0.3,0.3,0.6,rep(c(NA,0.3,0.3,0.6),8))forestplot(as.matrix(forestplot.OS[,c(1,2,3,7,8)]),mean=forestplot.OS$V4,lower = forestplot.OS$V5, upper = forestplot.OS$V6,graph.pos =...原创 2018-08-12 12:31:21 · 1540 阅读 · 0 评论 -
R包安装报错
ERROR: failed to lock directory ‘J:/software/R-3.5.1/library’ for modifying#添加参数:INSTALL_opts = c('--no-lock')install.packages("C:/Users/Administrator/AppData/Local/Temp/RtmpQJeYze/downloaded_pac...原创 2018-08-01 11:27:08 · 1872 阅读 · 1 评论 -
TCGA-HCC-差异分析-富集分析-pathview
library(pathview)library(TCGAbiolinks)library(SummarizedExperiment)library(clusterProfiler)#下载HCC的Gene expression文件query &lt;- GDCquery(project = "TCGA-LIHC", data.category = "G...原创 2018-08-09 16:24:12 · 3896 阅读 · 0 评论