创作日志: scHiCluster源代码中只给了人类的常染色体长度文件,小鼠的还需自己补充。
在UCSC找到的,这里面的比较全面:
人类hg19 染色体长度链接
人类hg38 染色体长度链接
小鼠mm9 染色体长度链接
小鼠mm10 染色体长度链接
比较懒的话我这里有现成的:
单位bp,只需要常染色体长度的话,把chrX和chrY的删去就好了。
hg19.chrom.sizes
chr1 249250621
chr2 243199373
chr3 198022430
chr4 191154276
chr5 180915260
chr6 171115067
chr7 159138663
chrX 155270560
chr8 146364022
chr9 141213431
chr10 135534747
chr11 135006516
chr12 133851895
chr13 115169878
chr14 107349540
chr15 102531392
chr16 90354753
chr17 81195210
chr18 78077248
chr20 63025520
chrY 59373566
chr19 59128983
chr22 51304566
chr21 48129895
hg38.chrom.sizes
chr1 248956422
chr2 242193529
chr3 198295559
chr4 190214555
chr5 181538259
chr6 170805979
chr7 159345973
chrX 156040895
chr8 145138636
chr9 138394717
chr11 135086622
chr10 133797422
chr12 133275309
chr13 114364328
chr14 107043718
chr15 101991189
chr16 90338345
chr17 83257441
chr18 80373285
chr20 64444167
chr19 58617616
chrY 57227415
chr22 50818468
chr21 46709983
mm9.chrom.sizes
chr1 197195432
chr2 181748087
chr3 159599783
chr4 155630120
chr5 152537259
chr6 149517037
chr7 152524553
chr8 131738871
chr9 124076172
chr10 129993255
chr11 121843856
chr12 121257530
chr13 120284312
chr14 125194864
chr15 103494974
chr16 98319150
chr17 95272651
chr18 90772031
chr19 61342430
chrX 166650296
chrY 15902555
mm10.chrom.sizes
chr1 195471971
chr2 182113224
chrX 171031299
chr3 160039680
chr4 156508116
chr5 151834684
chr6 149736546
chr7 145441459
chr10 130694993
chr8 129401213
chr14 124902244
chr9 124595110
chr11 122082543
chr13 120421639
chr12 120129022
chr15 104043685
chr16 98207768
chr17 94987271
chrY 91744698
chr18 90702639
chr19 61431566