fqkit: 一个处理fastq序列的小工具 （一）

一个用于处理fastq测序文件的命令行小工具，功能还在不断更新中，子命令也不多，支持gzip压缩文件的输入和输出（结果文件名以.gz结尾，结果会自动压缩）。

reop:

https://github.com/sharkLoc/fqkit

install:

cargo install fqkit

usage:

fqkit: a simple program for fastq file manipulation

Usage: fqkit [OPTIONS] <COMMAND>

Commands:
  topn
          get first N records from fastq file
  subfq
          subsample sequences from big fastq file
  search
          search reads/motifs from fastq file
  stats
          summary for fastq format file
  plot
          line plot for A T G C N percentage in read position
  fq2fa
          translate fastq to fasta
  barcode
          split barcode for PE reads
  remove
          remove reads by read name
  split
          split interleaved fastq file
  merge
          merge PE reads as interleaved fastq file
  split2
          split