ASAP标注软件安装教程Ubuntu20.04

以下转载自Github(需要针对ubuntu20.04+python3.8进行修改）：DeepLearningCamelyon/ASAP installation (Ubuntu 16.04) at master · 3dimaging/DeepLearningCamelyon · GitHub ASAP下载链接： Releases · computationalpathologygroup/ASAP · GitHub 第一步：安装一些需要的包

sudo apt-get install python3-tk

sudo apt-get install libpython3.6-dev

pip3 install matplotlib numpy

第二步：下载ASAP安装包，安装

#then download ASAP from the website: https://github.com/computationalpathologygroup/ASAP/releases

dpkg -i ASAP-1.8-python36-Linux.deb

# after that, a critical step is:

sudo apt-get -F

#to find where it was installed, use the command:

dpkg -L asap

 第三步：配置环境变量

#Now, we put it in the PYTHONPATH:

PYTHONPATH="/opt/ASAP/bin":"${PYTHONPATH}"

export PYTHONPATH

 第四步：测试有没有安装成功

#now we can begin

#type command : python3

#then we enter python,

>>>import matplotlib.pyplot as plt

>>> import multiresolutionimageinterface as mir

>>> reader = mir.MultiResolutionImageReader()

>>>mr_image = reader.open('/home/wli/Downloads/tumor_036.tif')

>>>tile = mr_image.getUCharPatch(0, 0, dims[0], dims[1], 6)

>>> plt.imshow(tile)

>>> plt.show()

>>> tile =mr_image.getUCharPatch(37000, 90000, 1024, 1024, 0)

>>> plt.imshow(tile)

>>>plt.show()

第五步：安装完成之后的GUI设置

第一次设置：

cd /opt/ASAP/bin
sudo chmod +x ASAP
./ASAP

下次再打开：

cd /opt/ASAP/bin
./ASAP