Bioinformatics Armory第7题：FASTQ format introduction

Problem

Sometimes it's necessary to convert data from FASTQ format to FASTA format. For example, you may want to perform a BLAST search using reads in FASTQ format obtained from your brand new Illumina Genome Analyzer.

Links:

• A FASTQ to FASTA converter can be accessed from the Sequence conversion website

• A free GUI converter developed by BlastStation is available here for download or as an add-on to Google Chrome.

• There is a FASTQ to FASTA converter in the Galaxy web platform. Note that you should register in the Galaxy and upload your file prior to using this tool.

Given: FASTQ file

Return: Corresponding FASTA records

有时有必要将数据从FASTQ格式转换为FASTA格式。例如，您可能希望使用从全新的Illumina基因组分析仪获得的FASTQ格式的读段执行BLAST搜索。

链接：

• 可以从序列转换网站访问FASTQ to FASTA转换器

• 由BlastStation开发的免费GUI转换器可从此处下载或作为Google Chrome的附件。

• 有一个FASTQ到FASTA转换器中的Galaxy网络平台。请注意，在使用此工具之前，您应该先在Galaxy中注册并上传文件。

给出： FASTQ文件

返回：对应的FASTA记录

 

Sample Dataset

@SEQ_ID
GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTCAACTCACAGTTT
+
!*((((***+))%%%++)(%%%%).1***-+*****))**55CCF>>>>>>CCCCCCC65

Sample Output

>SEQ_ID
GATTTGGGGTTCAAAGCAGTATCGATCAAATAGTAAATCCATTTGTTCAACTCACAGTTT