cmaq安装教程linux,CMAQ编译和安装

准备工作

预装基础环境，可配置YUM源(mirrors.tuna.tsinghua.edu.cn)，简单省事。

$ yum install gcc.x86_64 -y

$ yum install gcc-gfortran.x86_64 –y

$ yum install gcc-c++.x86_64

$ yum install openmpi.x86_64 –y (本文使用mpich)

下载各种所需安装包

# Download CMAQ source code and scripts

$ wget ftp://ftp.unc.edu/pub/cmas/SOFTWARE2/MODELS/CMAQ/5.0.1/CMAQv5.0.1.tar.gz

# Download CMAQ benchmark input data files

$ wget ftp://ftp.unc.edu/pub/cmas/SOFTWARE2/MODELS/CMAQ/5.0.1/DATA.CMAQv5.0.1.tar.gz

# CMAQ benchmark output data:

$ wget ftp://ftp.unc.edu/pub/cmas/SOFTWARE2/MODELS/CMAQ/5.0.1/DATA_REF.CMAQv5.0.1.tar.gz

# HDF5,can be ignore

$ wget ftp://ftp.hdfgroup.org/HDF5/current/src/hdf5-1.8.12.tar.gz

# zlib

$ wget http://zlib.net/zlib-1.2.8.tar.gz

# netcdf

$ wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.1.1.tar.gz

# netcdf-fortran

$ wget https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-fortran-4.2.tar.gz

# ioapi

$ wget http://www.baronams.com/products/ioapi/ioapi-3.1.tar.gz

# mpich

$ wget http://www.mpich.org/static/downloads/3.1/mpich-3.1.tar.gz

# pvm3,can be igore

$ wget http://www.netlib.org/pvm3/pvm3.4.6.tgz

编译安装

# Install zlib

$ ./configure

$ make

$ make install

# Install HDF5

$ ./configure --prefix=/usr/local/hdf5

$ make

$ make check # run test suite.

$ make install

$ make check-install # verify installation.

# Install NetCDF

$ CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib ./configure –prefix=/usr/local/netcdf

$ make check install

# Install NetCDF-Fortran

$ export DIR1 = /usr/local/netcdf

$ export LD_LIBRARY_PATH= ${DIR1}/lib:$ LD_LIBRARY_PATH

$ CPPFLAGS=-I${DIR1}/include LDFLAGS=-L${DIR1}/lib ./configure --prefix=${DIR1}

$ make check

$ make install

# Install ioapi

$ export BIN=Linux2_x86_64gfort (uname –a)

$ vim Makefile (top-level)

# CPLMODE=nocpl

# BASEDIR=${HOME}/ioapi

# INSTALL=/usr/local/ioapi

$ ln –s ${NETCDF_HOME}/lib/* ${BIN}/

$ make configure

$ make

# Install mpich

$ ./configure –prefix=/usr/local/mpich

$ make

$ make install

# Install pvm3

$ wget http://www.netlib.org/pvm3/pvm3.4.6.tgz

$ export PVM_ROOT=/root/cmaq/pvm3

$ make install

CMAQ较为复杂，单独拉出来说明。 将CMAQv5.0.1.tar.gz、DATA.CMAQv5.0.1.tar.gz和DATA_REF.CMAQv5.0.1.tar.gz解压后，将里面的内容移动至要安装的目录。

$ mv CMAQv5.0.1 /usr/local/cmaq

目录结构为：

[root@tu043122 cmaq]# ll

总用量 16

drwxr-xr-x. 15 root root 4096 3月 17 19:54 data

drwxr-xr-x. 3 root root 4096 3月 18 14:23 lib

drwxrwxr-x. 13 7596 2518 4096 7月 6 2012 models

drwxrwxr-x. 14 7596 2518 4096 3月 20 15:17 scripts

进入scripts目录，修改config.cmaq内容如下：

#> model archive location

setenv M3HOME /usr/local/cmaq

setenv M3MODEL $M3HOME/models

setenv M3DATA $M3HOME/data

#> architecture & compiler specific settings

#-------------------------------------------------------------------------------

setenv system "`/bin/uname -i`"

setenv bld_os "`/bin/uname -s``/bin/uname -r | cut -d. -f1`"

setenv lib_basedir $M3HOME/lib

setenv extra_lib "-lopa -lmpl -lrt -lpthread -ldl"

##> Gfortran compiler......................................................

setenv compiler gfort

setenv myFC gfortran

setenv myCC gcc

setenv myLINK_FLAG ""

setenv myFFLAGS "-ffixed-form -ffixed-line-length-132 -O3 -funroll-loops -finit-character=32 "

setenv myFRFLAGS "-ffree-form -ffree-line-length-none -O3 -funroll-loops -finit-character=32 "

setenv myCFLAGS "-O2"

setenv extra_lib "$extra_lib -lgomp"

#> automatically generate library location

setenv M3LIB ${lib_basedir}/${system}/${compiler}

#> set executable id

setenv EXECID ${bld_os}_${system}${compiler}

#> set only if CVS archive is on a remote computer

# setenv CVS_REMOTE_MACH address.of.your.computer

# setenv CVS_REMOTE_USER remote_user_name

# setenv CVS_RSH ssh

继续

$ cd $M3HOME

$ mkdir -p $M3LIB

$ cd $M3LIB

# do some soft link

$ ln –s ${MPICH_PATH} mpich

$ ln -s ${NETCDF_PATH} netcdf

$ ln -s ${IOAPI_PATH} ioapi_3.1

# build

$ cd $M3HOME/scripts/build

$ ./bldit.bldmake &> build.log

# stenex

$ cd $M3HOME/scripts/stenex

$ vim bldit.se

# set MPI_INC = /usr/local/mpich/include

$ ./bldit.se_noop &> build_se_noop.log

$ ./bldit.se &> build_se.log

# pario

$ cd $M3HOME/scripts/pario

$ ./bldit.pario &> build.log

# jproc

$ cd $M3HOME/scripts/jproc

$ vim bldit.jproc

# set LIB1 = "-L${IOAPI}"

# set LIB2 = "-L${NETCDF}"

# set LIBS = "$LIB1 $LIB2 -lgomp -lnetcdff"

$ ./bldit.jproc &> build.log

# icon

$ cd $M3HOME/scripts/icon

$ vim bldit.icon

# set LIB1 = "-lgomp -lnetcdff"

# set NETCDF = "${M3LIB}/netcdf/lib -lnetcdf -lnetcdff"

$ ./bldit.icon &> build.log

# bcon

$ cd $M3HOME/scripts/bcon

$ vim bldit.bcon

# set LIBS = "$LIB1 $LIB2 -lgomp -lnetcdff"

$ ./bldit.bcon &> build.log

# mip4

$ cd $M3HOME/scripts/mcip4/src

$ vim Makefile

# select gfortran compiler

# NETCDF = /usr/local/netcdf

# IOAPI_ROOT = /root/alei/ioapi/ioapi

# FC = gfortran

# FFLAGS = -O3 -I$(NETCDF)/include -I$(IOAPI_ROOT)/Linux2_x86_64gfort

# LIBS = -L$(IOAPI_ROOT)/Linux2_x86_64gfort -lioapi \

# -L$(NETCDF)/lib -lnetcdf -lnetcdff \

# -lgomp

$ make

# cctm

$ cd cctm

$ vim bldit.cctm

# set MPI_INC = ${M3LIB}/mpich/include

# set NETCDF = "${M3LIB}/netcdf/lib -lnetcdf -lnetcdff"

$ ./bldit.cctm &> build.log

启动运行

编译完毕，开始运行吧

# Run icon

$ cd $M3HOME/scripts/icon

$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CMAQ_HOME/lib/x86_64/gfort/netcdf/lib

$ ./run.icon &> run.log

# Run jproc

$ cd $M3HOME/scripts/jproc && ./run.jproc &> run.log

# Run cctm

$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$CMAQ_HOME/lib/x86_64/gfort/mpich/lib

$ vim run.cctm

# unlimit memorylocked

# unlimit stacksize¬¬

$ ./run.cctm

注意事项

NetCDF和NetCDF-Fortran分别安装，依赖NetCDF-Fortran的需要指定-lnetcdff。

执行bldt.**时，务必将build日志记录下来，这货出错不会中断，说不定中间就有ERROR产生。

HDF5和PVM可以忽略，如不装HDF5编译NetCDF时需要增加--disable-netcdf-4选项。另外openmpi和mpich选其一即可。

参考文档