mauve软件安装linux,Debian -- 在 stretch 中的 progressivemauve 软件包详细信息

multiple genome alignment algorithms

The mauveAligner and progressiveMauve alignment algorithms have been

implemented as command-line programs included with the downloadable Mauve

software. When run from the command-line, these programs provide options

not yet available in the graphical interface.

Mauve is a system for efficiently constructing multiple genome alignments

in the presence of large-scale evolutionary events such as rearrangement

and inversion. Multiple genome alignment provides a basis for research

into comparative genomics and the study of evolutionary dynamics. Aligning

whole genomes is a fundamentally different problem than aligning short

sequences.

Mauve has been developed with the idea that a multiple genome aligner

should require only modest computational resources. It employs algorithmic

techniques that scale well in the amount of sequence being aligned. For

example, a pair of Y. pestis genomes can be aligned in under a minute,

while a group of 9 divergent Enterobacterial genomes can be aligned in

a few hours.

Mauve computes and interactively visualizes genome sequence comparisons.

Using FastA or GenBank sequence data, Mauve constructs multiple genome

alignments that identify large-scale rearrangement, gene gain, gene loss,

indels, and nucleotide substutition.

Mauve is developed at the University of Wisconsin.