linux离线安装rjava,无法安装rJava

无法在ubuntu上安装rjava软件包，R版本是3.1。 jdk i.7已安装。请分享R的java配置的确切路径。我已经尝试使用javareconf -e来设置rjava的env。无法安装rJava

下面是rJava安装后的输出。

install.packages("rJava")

Installing package into ‘/home/emraan/R/i686-pc-linux-gnu-library/3.1’

* installing *source* package ‘rJava’ ...

** package ‘rJava’ successfully unpacked and MD5 sums checked

checking for gcc... gcc -std=gnu99

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc -std=gnu99 accepts -g... yes

checking for gcc -std=gnu99 option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -std=gnu99 -E

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... yes

checking for sys/wait.h that is POSIX.1 compatible... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for string.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for an ANSI C-conforming const... yes

checking whether time.h and sys/time.h may both be included... yes

configure: checking whether gcc -std=gnu99 supports static inline...

yes

checking whether setjmp.h is POSIX.1 compatible... yes

checking whether sigsetjmp is declared... yes

checking whether siglongjmp is declared... yes

checking Java support in R... present:

interpreter : '/usr/bin/java'

archiver : ''

compiler : '/usr/bin/javac'

header prep.: ''

cpp flags : '-I/usr/lib/jvm/jdk1.7.0_51/jre/../include'

java libs : '-L/usr/lib/jvm/jdk1.7.0_51/jre/lib/i386/client -ljvm'

configure: error: One or more Java configuration variables are not set.

Make sure R is configured with full Java support (including JDK). Run

R CMD javareconf

as root to add Java support to R.

If you don't have root privileges, run

R CMD javareconf -e

to set all Java-related variables and then install rJava.

ERROR: configuration failed for package ‘rJava’

* removing ‘/home/emraan/R/i686-pc-linux-gnu-library/3.1/rJava’

Warning in install.packages :

installation of package ‘rJava’ had non-zero exit status

The downloaded source packages are in

‘/tmp/Rtmp12bZIF/downloaded_packages’

**Output of sudo CMD R javareconf**

Java interpreter : /usr/lib/jvm/jdk1.7.0_51/jre/bin/java

Java version : 1.7.0_51

Java home path : /usr/lib/jvm/jdk1.7.0_51/jre

Java compiler : /usr/lib/jvm/jdk1.7.0_51/jre/../bin/javac

Java headers gen.: /usr/lib/jvm/jdk1.7.0_51/jre/../bin/javah

Java archive tool: /usr/lib/jvm/jdk1.7.0_51/jre/../bin/jar

trying to compile and link a JNI progam

detected JNI cpp flags : -I$(JAVA_HOME)/../include

detected JNI linker flags : -L$(JAVA_HOME)/lib/i386/client -ljvm

gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/usr/lib/jvm/jdk1.7.0_51/jre/../include -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c conftest.c -o conftest.o

gcc -std=gnu99 -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/jdk1.7.0_51/jre/lib/i386/client -ljvm -L/usr/lib/R/lib -lR

JAVA_HOME : /usr/lib/jvm/jdk1.7.0_51/jre

Java library path: $(JAVA_HOME)/lib/i386/client

JNI cpp flags : -I$(JAVA_HOME)/../include

JNI linker flags : -L$(JAVA_HOME)/lib/i386/client -ljvm

Updating Java configuration in /usr/lib/R

/usr/lib/R/bin/javareconf: 405: /usr/lib/R/bin/javareconf: cannot create /usr/lib/R/etc/Makeconf.new: Permission denied

*** cannot create /usr/lib/R/etc/Makeconf.new

*** Please run as root if required.

+0

任何配置就成为该错误信息提示，你跑的r CMD javareconf'为根，或'[R CMD javareconf作为-e'不是root然后再试一次？ –

+0

你把'javareconf'作为'root'运行了吗？ –