java已经存在rjava,R-Project：xlsx包安装失败(由于java问题)

我试图安装xlsx软件包,不幸的是,

Java存在一个问题,我无法解决.

请在下面找到尝试安装xlsx包时产生的输出.

这是输出：

R version 3.1.1 (2014-07-10) -- "Sock it to Me"

Copyright (C) 2014 The R Foundation for Statistical Computing

Platform: x86_64-redhat-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.

You are welcome to redistribute it under certain conditions.

Type 'license()' or 'licence()' for distribution details.

Natural language support but running in an English locale

R is a collaborative project with many contributors.

Type 'contributors()' for more information and

'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or

'help.start()' for an HTML browser interface to help.

Type 'q()' to quit R.

> install.packages("xlsx")

Installing package into ‘/home/tamaspavlicek/R/x86_64-redhat-linux-gnu-library/3.1’

(as ‘lib’ is unspecified)

also installing the dependencies ‘rJava’, ‘xlsxjars’

trying URL 'contrib/rJava_0.9-6.tar.gz'

Content type 'application/x-gzip' length 567515 bytes (554 Kb)

opened URL

==================================================

downloaded 554 Kb

trying URL 'contrib/xlsxjars_0.6.1.tar.gz'

Content type 'application/x-gzip' length 9477071 bytes (9.0 Mb)

opened URL

==================================================

downloaded 9.0 Mb

trying URL 'contrib/xlsx_0.5.7.tar.gz'

Content type 'application/x-gzip' length 312839 bytes (305 Kb)

opened URL

==================================================

downloaded 305 Kb

* installing *source* package ‘rJava’ ...

** package ‘rJava’ successfully unpacked and MD5 sums checked

checking for gcc... gcc -m64 -std=gnu99

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc -m64 -std=gnu99 accepts -g... yes

checking for gcc -m64 -std=gnu99 option to accept ISO C89... none needed

checking how to run the C preprocessor... gcc -m64 -std=gnu99 -E

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for ANSI C header files... yes

checking for sys/wait.h that is POSIX.1 compatible... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for string.h... (cached) yes

checking sys/time.h usability... yes

checking sys/time.h presence... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for an ANSI C-conforming const... yes

checking whether time.h and sys/time.h may both be included... yes

configure: checking whether gcc -m64 -std=gnu99 supports static inline...

yes

checking whether setjmp.h is POSIX.1 compatible... yes

checking whether sigsetjmp is declared... yes

checking whether siglongjmp is declared... yes

checking Java support in R... present:

interpreter : '/bin/java'

archiver : '/bin/jar'

compiler : '/bin/javac'

header prep.: '/bin/javah'

cpp flags : '-I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/../include -I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/../include/linux'

java libs : '-L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/lib/amd64/server -ljvm'

checking whether Java run-time works...

Error: Could not find or load main class getsp

no

configure: error: Java interpreter '/bin/java' does not work

ERROR: configuration failed for package ‘rJava’

* removing ‘/home/tamaspavlicek/R/x86_64-redhat-linux-gnu-library/3.1/rJava’

Warning in install.packages :

installation of package ‘rJava’ had non-zero exit status

ERROR: dependency ‘rJava’ is not available for package ‘xlsxjars’

* removing ‘/home/tamaspavlicek/R/x86_64-redhat-linux-gnu-library/3.1/xlsxjars’

Warning in install.packages :

installation of package ‘xlsxjars’ had non-zero exit status

ERROR: dependencies ‘rJava’, ‘xlsxjars’ are not available for package ‘xlsx’

* removing ‘/home/tamaspavlicek/R/x86_64-redhat-linux-gnu-library/3.1/xlsx’

Warning in install.packages :

installation of package ‘xlsx’ had non-zero exit status

The downloaded source packages are in

‘/tmp/Rtmpj1UG8a/downloaded_packages’

安装Java：

java -version提供以下输出：

java version "1.7.0_71"

OpenJDK Runtime Environment (fedora-2.5.3.0.fc20-x86_64 u71-b14)

OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)

“sudo R CMD javareconf”导致：

Java interpreter : /bin/java

Java version : 1.7.0_71

Java home path : /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre

Java compiler : /bin/javac

Java headers gen.: /bin/javah

Java archive tool: /bin/jar

trying to compile and link a JNI progam

detected JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux

detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm

gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/../include -I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/../include/linux -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c conftest.c -o conftest.o

gcc -m64 -std=gnu99 -shared -Wl,-z,relro -o conftest.so conftest.o -L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/lib/amd64/server -ljvm -L/usr/lib64/R/lib -lR

JAVA_HOME : /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre

Java library path: $(JAVA_HOME)/lib/amd64/server

JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux

JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm

Updating Java configuration in /usr/lib64/R

Done.

尽管如此,install.packages(‘rJava’)导致：

checking Java support in R... present:

interpreter : '/bin/java'

archiver : '/bin/jar'

compiler : '/bin/javac'

header prep.: '/bin/javah'

cpp flags : '-I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/../include -I/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/../include/linux'

java libs : '-L/usr/lib/jvm/java-1.7.0-openjdk-1.7.0.71-2.5.3.0.fc20.x86_64/jre/lib/amd64/server -ljvm'

checking whether Java run-time works...

Error: Could not find or load main class getsp

no

configure: error: Java interpreter '/bin/java' does not work

ERROR: configuration failed for package ‘rJava’

* removing ‘/home/tamaspavlicek/R/x86_64-redhat-linux-gnu-library/3.1/rJava’

Warning in install.packages :

installation of package ‘rJava’ had non-zero exit status

The downloaded source packages are in

‘/tmp/Rtmpnl17m7/downloaded_packages’

我不知道如何解决这个java问题.我使用RStudio和Fedora.

非常感谢您的帮助.

谢谢

塔马斯