感谢@lgautier,我更深入地研究了一下,发现在Python中使用rpy2实现了多变量DTW。只需将模板和查询作为2D矩阵(矩阵如R所示)传递,就可以让rpy2dtw包执行一个多元dtw。另外,如果安装了R,则加载R dtw库并“?“dtw”将允许访问图书馆的文档和图书馆提供的不同功能。在import numpy as np
import rpy2.robjects.numpy2ri
rpy2.robjects.numpy2ri.activate()
from rpy2.robjects.packages import importr
import rpy2.robjects as robj
R = rpy2.robjects.r
DTW = importr('dtw')
# Generate our data
template = np.array([[1,2,3,4,5],[1,2,3,4,5]]).transpose()
rt,ct = template.shape
query = np.array([[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16],[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16]]).transpose()
rq,cq = query.shape
#converting numpy matrices to R matrices
templateR=R.matrix(template,nrow=rt,ncol=ct)
queryR=R.matrix(query,nrow=rq,ncol=cq)
# Calculate the alignment vector and corresponding distance
alignment = R.dtw(templateR,queryR,keep=True, step_pattern=R.rabinerJuangStepPattern(4,"c"),open_begin=True,open_end=True)
dist = alignment.rx('distance')[0][0]
print dist