python绘制球体_python – 从pymol中的笛卡尔坐标绘制一个彩色球体

您所呈现的实际上与分子结构有什么关系(即使用PyMol的动机是什么)？

如果您正在绘制一些分子结构,我建议只输出带有球体坐标的自定义PDB文件(您可以使用每个ATOM线的B因子字段作为控制PyMol中每个原子着色的方法).

如果你没有绘制分子结构,最好使用PyMol的CGO接口.

从PyMol文档：

CGO spheres are generated by the

SPHERE command.

SPHERE, x,y,z,d

where x,y,z are the coordinates of the

sphere centre and d is the diameter of

the sphere. Note how a COLOR command

is used to set the colour of a sphere.

As with LINES you only need a COLOR

command when the colour of the next

sphere to be drawn changes.

一个简单的例子：

from pymol.cgo import *

from pymol import cmd

spherelist = [

COLOR, 0.100, 1.000, 0.000,

SPHERE, 30.304, 30.407, 30.531,0.30,

COLOR, 1.000, 0.000, 0.000,

SPHERE, 30.250, 30.250, 30.250,0.20,

]

cmd.load_cgo(spherelist, 'segment', 1)