HDF5 windows编译 release版本、Debug版本

最新推荐文章于 2024-08-22 08:09:50 发布

鸿儒517

最新推荐文章于 2024-08-22 08:09:50 发布

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分类专栏： C++ 笔记心得文章标签： c++ HDF5

本文链接：https://blog.csdn.net/weixin_42727069/article/details/125703405

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由于最近急需的一个项目，需要hdf5库，误打误撞，编译成功。特此记录

1、下载源代码

官网下载地址：https://portal.hdfgroup.org/display/support/HDF5+1.12.2#files

找到如下地址，本人电脑有cmake软件，我下载了Cmake版本和源代码版本同时进行了，事实上我也下载了源码进行cmake手工编译，但是不如直接下载CMake版本的来的方便，所以这里我直接记录了Cmake版本的编译方法
在这里插入图片描述

如果下载不了，可以通过该链接进行下载

2、编译步骤：

如果不想看怎么编译，可以从这里下载我编译好的库
1、下载解压（注意路径，最好不要有中文路径，个人习惯）
2、进入文件夹后，如下图
在这里插入图片描述
3、该文件夹下有很多批处理文件，由于我电脑上有VS2017,所以我默认使用“build-VS2017-64_debug.bat”文件。

4、点击“build-VS2017-64.bat”以管理员方式运行，剩下就是看着cmd窗口不断的编译、等待…

5、无尽等待完后，就是查看成果了。该编译的成果就在“build-VS2017-64.bat”同级文件夹的“HDF5-1.12.2-win64.zip”压缩包（我是后面改名：HDF5-1.12.2-win64_release.zip，由于这个bat处理里面是只编译Release版本，Debug版本需要再单独编译，我是在后面配置测试才发现这个问题，这里我就不记录怎么走的弯路了）
在这里插入图片描述

6、Debug版本编译：更改“HDF5-1.12.2-win64.zip”为“HDF5-1.12.2-win64_release.zip”，避免编译debug版本的时候被覆盖了。复制一份“build-VS2017-64.bat”改名为“build-VS2017-64_debug.bat”，用notepad打开后，将“Release”更换为“Debug”即可
在这里插入图片描述
7、点击“build-VS2017-64_debug.bat”以管理员方式运行，剩下就是看着cmd窗口不断的编译、等待…
8、更改“HDF5-1.12.2-win64.zip”为“HDF5-1.12.2-win64_debug.zip”,将debug压缩包和release压缩包解压，然后进行“bin”文件夹、“lib”文件夹合并即可。

Debug lib文件加载下面即可：

libaec_D.lib
libhdf5_D.lib
libhdf5_cpp_D.lib
libhdf5_hl_D.lib
libhdf5_hl_cpp_D.lib
libhdf5_tools_D.lib
libszaec_D.lib
libz_D.lib

3、测试代码

Create H5文件测试代码：
该代码

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright © 2020 Wei Wang.						                           *
 * Created by WW on 2020/01/26.	                                               *
 * All rights reserved.							                               *
 *	                                                                           *
 * This example illustrates how to create a dataset that is a 4 x 6 array.     *
 * Reference: HDF5 Tutorial (https://portal.hdfgroup.org/display/HDF5/HDF5)    *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

 //
 // h5cpp_creating.cpp
 // CPP
 //

#include <iostream>
#include <string>
#include "H5Cpp.h"

#ifndef _H5_NO_NAMESPACE_
using namespace H5;
#ifndef _H5_NO_STD_
using std::cout;
using std::endl;
#endif /* _H5_NO_STD_ */        
#endif /* _H5_NO_NAMESPACE_ */

#define PI 3.1415926535

/*
 *  Define the names of HDF5 file, groups, datasets, and attributes.
 *  Use H5::H5std_string for name strings.
 */
const H5std_string FILE_NAME("h5cpp_example.hdf5");
const H5std_string GROUP_NAME("group1");
const H5std_string DATASET_NAME("dset");
const H5std_string ATTR_NAME1("myAttr1");
const H5std_string ATTR_NAME2("myAttr2");

const int DIM0 = 4;       // dataset dimensions
const int DIM1 = 6;
const int RANK = 2;

int main(int argc, char **argv)
{
	// Try block to detect exceptions raised by any of the calls inside it.
	try
	{
		/*
		 * Turn off the auto-printing when failure occurs so that we can
		 * handle the errors appropriately.
		 */
		Exception::dontPrint();

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		double data[DIM0][DIM1];	    // buffer for data to write

		for (int i = 0; i < DIM0; i++)
			for (int j = 0; j < DIM1; j++)
				data[i][j] = (i + 1) * PI + j;


		// Create a new file using the default property lists.
		// H5::H5F_ACC_TRUNC : create a new file or overwrite an existing file.
		H5File file(FILE_NAME, H5F_ACC_TRUNC);

		// Create a group under root '/'.
		Group group(file.createGroup(GROUP_NAME));


		// Use H5::hsize_t (similar to int) for dimensions.
		hsize_t dims[RANK];               // dataset dimensions
		dims[0] = DIM0;
		dims[1] = DIM1;

		// Create the dataspace for a dataset first.
		DataSpace dataspace(RANK, dims);

		// Create the dataset under group with specified dataspace.      
		DataSet dataset = group.createDataSet(DATASET_NAME, PredType::NATIVE_DOUBLE, dataspace);

		// Write data in buffer to dataset.
		dataset.write(data, PredType::NATIVE_DOUBLE);

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		int attr1_data[2] = { 100, 200 };          // buffer for attribute data to wirte

		hsize_t attr1_dims[1] = { 2 };             // attribute dimension, rank = 1

		// Create the dataspace for an attribute first.
		DataSpace attr1_dataspace(1, attr1_dims);         // rank = 1

		// Create the attribute of dataset with specified dataspace.
		Attribute attribute1 = dataset.createAttribute(ATTR_NAME1, PredType::STD_I32BE, attr1_dataspace);

		// Write data in buffer to attribute.
		attribute1.write(PredType::NATIVE_INT, attr1_data);

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		/* String Data */

		char attr2_data[30];    // buffer for attribute data to wirte 
		sprintf(attr2_data, "hello, world!\nAuthor: Wei Wang");

		hsize_t attr2_dims[1] = { 30 };       // attribute dimension, rank = 1

		// Create the dataspace for an attribute first.
		DataSpace attr2_dataspace(1, attr2_dims);       // rank = 1

		// Create the attribute of dataset with specified dataspace.
		Attribute attribute2 = dataset.createAttribute(ATTR_NAME2, PredType::NATIVE_CHAR, attr2_dataspace);

		// Write data in buffer to attribute.
		attribute2.write(PredType::NATIVE_CHAR, attr2_data);

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		// Save and exit the group.
		group.close();
		// Save and exit the file.
		file.close();

		/* h5cpp_example.hdf5 file structure
		 * +-- '/'
		 * |   +-- group 'group1'
		 * |   |   +-- dataset 'dset'
		 * |   |   |   +-- attribute 'myAttr1'
		 * |   |   |   +-- attribute 'myAttr2'
		 * |   |   |
		 * |   |
		 * |
		 */

	}  // end of try block


	// Catch failure caused by the H5File operations.
	catch (FileIException error)
	{
		error.printErrorStack();
		return -1;
	}

	// Catch failure caused by the DataSet operations.
	catch (DataSetIException error)
	{
		error.printErrorStack();
		return -1;
	}

	// Catch failure caused by the DataSpace operations.
	catch (DataSpaceIException error)
	{
		error.printErrorStack();
		return -1;
	}

	return 0;  // successfully terminated

}

H5 Reading测试代码，里面一段代码需要改一下才可以用，我用Create h5代码测试可以了就没有继续改了

double data_out[dims[0]][dims[1]];

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright © 2020 Wei Wang.                                                  *
 * Created by WW on 2020/01/26.                                                *
 * All rights reserved.                                                        *
 *                                                                             *
 * This example illustrates how to read and edit an existing dataset.          *
 * Reference: HDF5 Tutorial (https://portal.hdfgroup.org/display/HDF5/HDF5)    *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */



 //
 // h5cpp_reading.cpp
 // CPP
 //

#include <iostream>
#include <string>
#include "H5Cpp.h"

#ifndef _H5_NO_NAMESPACE_
using namespace H5;
#ifndef _H5_NO_STD_
using std::cout;
using std::endl;
#endif /* _H5_NO_STD_ */        
#endif /* _H5_NO_NAMESPACE_ */

/*
 *  Define the names of HDF5 file, groups, datasets, and attributes.
 *  Use H5::H5std_string for name strings.
 */
const H5std_string FILE_NAME("h5cpp_example.hdf5");
const H5std_string GROUP_NAME("group1");
const H5std_string DATASET_NAME("dset");
const H5std_string ATTR_NAME("myAttr2");

int main(int argc, char **argv)
{

	// Try block to detect exceptions raised by any of the calls inside it.
	try
	{
		/*
		 * Turn off the auto-printing when failure occurs so that we can
		 * handle the errors appropriately
		 */
		Exception::dontPrint();

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		/* HOW TO DELETING A DATASET! */

		/*

		// Open an existing file.
		// H5::H5F_ACC_RDWR : read or edit an existing file.
		H5File file_d(FILE_NAME, H5F_ACC_RDWR);

		// Open an existing group.
		Group group_d = file_d.openGroup(GROUP_NAME);

		// Use H5::H5Ldelete to delete an existing dataset.
		int result = H5Ldelete(group_d.getId(), DATASET_NAME.c_str(), H5P_DEFAULT);
		// String.c_str() convert "string" to "const char *".

		cout << result << endl;
		// Non-negtive: successfully delete;
		// Otherwise: fail.

		// Save and exit the group.
		group_d.close();
		// Save and exit the file.
		file_d.close();
		// Important! The two close()s above can't be omitted!
		// Otherwise, the deleting behavior won't be saved to file.

		*/

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		// Open an existing file.
		// H5::H5F_ACC_RDWR : read or edit an existing file.
		H5File file(FILE_NAME, H5F_ACC_RDWR);

		// Open an existing group of the file.
		Group group = file.openGroup(GROUP_NAME);

		// Open an existing dataset of the group.
		DataSet dataset = group.openDataSet(DATASET_NAME);

		// Get the dataspace of the dataset.
		DataSpace filespace = dataset.getSpace();

		// Get the rank of the dataset.
		int rank = filespace.getSimpleExtentNdims();

		// Use H5::hsize_t (similar to int) for dimensions
		//hsize_t dims[rank];        // dataset dimensions
		hsize_t* dims=new hsize_t[rank];        // dataset dimensions

		// Get the dimensions of the dataset.
		rank = filespace.getSimpleExtentDims(dims);

		cout << DATASET_NAME << " rank = " << rank << ", dimensions "
			<< dims[0] << " x "
			<< dims[1] << endl;

		// Dataspace for data read from file.
		DataSpace myspace(rank, dims);
		
//下面这个代码定义有问题，不能使用变量当作常数这么定义，需要改一下
		double data_out[dims[0]][dims[1]];      // buffer for data read from file
		//=======================================================================================================
		//double** data_out=new double*[dims[0]];      // 这一段代码改写可能存在问题
		//for (int id = 0; id < dims[0]; id++)
		//{
		//	data_out[id] = new double[dims[1]];
		//}
		//=======================================================================================================


		// Read data from file to buffer.
		dataset.read(data_out, PredType::NATIVE_DOUBLE, myspace, filespace);

		for (int i = 0; i < dims[0]; i++)
		{
			for (int j = 0; j < dims[1]; j++)
				cout << data_out[i][j] << " ";
			cout << endl;
		}

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
		// Read the attribute of the dataset.
		cout << endl;

		// Open an existing attribute of the dataset.
		Attribute attr = dataset.openAttribute(ATTR_NAME);

		// Get the dataspace of the attribute.
		DataSpace attr_space = attr.getSpace();

		// Get the rank of the attribute.
		int attr_rank = attr_space.getSimpleExtentNdims();

		// Use H5::hsize_t (similar to int) for dimensions.
		//hsize_t attr_dims[attr_rank];       // attribute dimensions
		hsize_t* attr_dims=new hsize_t[attr_rank];       //改写上面一句代码

		// Get the dimension of the attribute.
		attr_rank = attr_space.getSimpleExtentDims(attr_dims);

		cout << ATTR_NAME << " rank = " << attr_rank << ", dimensions " << attr_dims[0] << endl;

		//char attr_data_out[attr_dims[0]];   // buffer for attribute data read from file
		char* attr_data_out=new char[attr_dims[0]];   // buffer for attribute data read from file

		// Read attribute data from file to buffer.  
		attr.read(PredType::NATIVE_CHAR, attr_data_out);

		cout << attr_data_out << endl;

		/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

		// Save and exit the group.
		group.close();
		// Save and exit the file.
		file.close();

	}  // end of try block

	// Catch failure caused by the H5File operations.
	catch (FileIException error)
	{
		error.printErrorStack();
		return -1;
	}

	// Catch failure caused by the DataSet operations.
	catch (DataSetIException error)
	{
		error.printErrorStack();
		return -1;
	}

	// Catch failure caused by the DataSpace operations.
	catch (DataSpaceIException error)
	{
		error.printErrorStack();
		return -1;
	}

	return 0;  // successfully terminated

}