安装程序包‘xxxx’时退出狀態的值不是0

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已于 2022-12-04 14:47:18 修改

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于 2022-12-04 14:43:58 首次发布

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关于安装程序包‘xxxx’时退出狀態的值不是0

之前安装很多包到最后都报错显示退出状态的值不是0，具体报错代码如下：

> BiocManager::install("org.Hs.eg.db")
'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31)
Installing package(s) 'BiocVersion', 'org.Hs.eg.db'
还安装相依关系‘zlibbioc’, ‘RCurl’, ‘GenomeInfoDbData’, ‘bit’, ‘XVector’, ‘GenomeInfoDb’, ‘bit64’, ‘blob’, ‘plogr’, ‘Biostrings’, ‘BiocGenerics’, ‘Biobase’, ‘IRanges’, ‘DBI’, ‘RSQLite’, ‘S4Vectors’, ‘KEGGREST’, ‘AnnotationDbi’


  有二进制版本的，但源代码版本是后来的:
             binary source needs_compilation
GenomeInfoDb 1.34.3 1.34.4             FALSE

试开URL’https://bioconductor.org/packages/3.16/bioc/bin/macosx/big-sur-arm64/contrib/4.2/zlibbioc_1.44.0.tgz'
Content type 'application/x-gzip' length 64914 bytes (63 KB)
==================================================
downloaded 63 KB

试开URL’https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.2/RCurl_1.98-1.9.tgz'
Content type 'application/x-gzip' length 1102353 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

试开URL’https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.2/bit_4.0.5.tgz'
Content type 'application/x-gzip' length 1233784 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

试开URL’https://bioconductor.org/packages/3.16/bioc/bin/macosx/big-sur-arm64/contrib/4.2/XVector_0.38.0.tgz'
Content type 'application/x-gzip' length 622135 bytes (607 KB)
==================================================
downloaded 607 KB

试开URL’https