geo下载数据_geo数据下载-CSDN博客

本文链接：https://blog.csdn.net/2302_80012625/article/details/143907775

ncbi（https://www.ncbi.nlm.nih.gov/gds/?term=GSE131953）
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Metadata内容如下

Run,AGE,Assay Type,AvgSpotLen,Bases,BIOMATERIAL_PROVIDER,BioProject,BioSample,BioSampleModel,Bytes,Center Name,Consent,DATASTORE filetype,DATASTORE provider,DATASTORE region,Experiment,Instrument,isolate,LibraryLayout,LibrarySelection,LibrarySource,Organism,Platform,ReleaseDate,create_date,version,Sample Name,sex,SRA Study,tissue,cell_type,Library Name,RACE,sample_type,cell_line,disease,Ethnicity,GEO_Accession (exp)
SRR9159907,16week embryo,ChIP-Seq,51,2462111343,Hiroshi Kimura,PRJNA532996,SAMN11877745,Human,1741640726,GEO,public,"fastq,run.zq,sra","gs,ncbi,s3","gs.us-east1,ncbi.public,s3.us-east-1",SRX5932985,Illumina HiSeq 2500,commercial,SINGLE,ChIP,GENOMIC,Homo sapiens,ILLUMINA,2019-08-08T00:00:00Z,2019-05-30T12:39:00Z,1,IMR90 cells,female,SRP192924,lung,,,,,IMR90,normal,Caucasian,GSM3832640
SRR9159908,16week embryo,ChIP-Seq,50,3150816050,Hiroshi Kimura,PRJNA532996,SAMN11877745,Human,1814754413,GEO,public,"SOLiD_native,sra","gs,ncbi,s3","gs.us-east1,ncbi.public,s3.us-east-1",SRX5932986,AB 5500 Genetic Analyzer,commercial,SINGLE,ChIP,GENOMIC,Homo sapiens,ABI_SOLID,2019-08-08T00:00:00Z,2019-05-30T12:46:00Z,1,IMR90 cells,female,SRP192924,lung,,,,,IMR90,normal,Caucasian,GSM3832641

accession list

SRR9159907
SRR9159908
SRR9159909

aspera安装看：（https://blog.csdn.net/qq_52813185/article/details/111570413?ops_request_misc=%257B%2522request%255Fid%2522%253A%25222469f28003ce3cad943f55b27b9233d8%2522%252C%2522scm%2522%253A%252220140713.130102334…%2522%257D&request_id=2469f28003ce3cad943f55b27b9233d8&biz_id=0&utm_medium=distribute.pc_search_result.none-task-blog-2_allsobaiduend~default-1-111570413-null-null.142^v100pc_search_result_base1&utm_term=aspera%E4%B8%8B%E8%BD%BD&spm=1018.2226.3001.4187）

# 1. 从 SraRunTable.csv 中筛选包含 "HAoEC" 的行，并提取第一列（用逗号分隔）
grep "HAoEC" SraRunTable.csv | \
awk -F',' '{print $1}' | \

# 2. 使用提取出的第一列（SRR号）在 SRR_Acc_List_(1).txt 文件中查找匹配行
grep -F -f - SRR_Acc_List_\(1\).txt | \

# 3. 将匹配行的第一列（SRR号）写入文件 down
awk -v file="down" '{print $1 > file}'