1、sspord重新预测,之前预测的是脂溶性。要用predict_ssa.sh预测。
机器:10.10.119.60
分割为p1-7000.txt和p7000-16632.txt两文件,分别在ssprod和BACKUP中运行。运行结果正常。
2、PROFphd
(1)要求输入格式为HSSP:HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS
(2)单序列也可以,预测精度要低一些
3、jnet结果的整合:
结果整合的新思路:
分别的到name.txt protein.txt structure.txt prediction.txt
并且只保存单一信息,即预测结果只保存2级结构。
再通过combine.cpp整合四个文件信息
/*
combine.cpp
By DYS
Function:Combine name real structure and prediction structure
Inputfile:name.txt real_structure prediction_structure
Onputfile:result.txt
*/
#include <stdio.h>
#include <fstream>
#include <iostream>
using namespace std;
int main()
{
ifstream name("name.txt");
ifstream aa("protein.txt");
ifstream real_structure("re_sturcture.txt");
ifstream prediction("jnet_prediction_result.txt");
ofstream combine("result.txt");
string name_str,aa_str,real_structure_str,prediction_str;
name>>name_str;
while(!name.eof())
{
aa>>aa_str;
real_structure>>real_structure_str;
prediction>>prediction_str;
//name_str>>endl>>aa_str>>endl>>real_structure_str>>endl>>prediction_str>>endl>>combine;
combine<<name_str<<endl<<aa_str<<endl<<real_structure_str<<endl<<prediction_str<<endl;
name>>name_str;
}
}//int main