种子数据集的数据处理
在这里插入代码片
import numpy as np
import random
# 第一次执行文件时没有设置种子。本文中用于初始板的浓度可以在data/plate_AL_1_raw_everything.csv中找到
data_folder = "echo_files"
# 允许的浓度比例
extract_conc = [1]
mg_gluta_conc = [0.1, 0.3, 0.5, 1]
K_gluta_conc = [0.1, 0.3, 0.5, 1]
aa_conc = [0.1, 0.3, 0.5, 1]
peg_conc = [1]
hepes_conc = [1]
trna_conc = [0.1, 0.3, 0.5, 1]
coa_conc = [0.1, 0.3, 0.5, 1]
nad_conc = [0.1, 0.3, 0.5, 1]
camp_conc = [0.1, 0.3, 0.5, 1]
folinic_acid_conc = [0.1, 0.3, 0.5, 1]
spermidine_conc = [0.1, 0.3, 0.5, 1]
pga_conc = [0.1, 0.3, 0.5, 1]
nucleo_conc = [0.1, 0.3, 0.5, 1]
DNA_mix = [0, 1]
promoter_conc = [1]
RBS_conc = [1]
# 每种成分的最大浓度
extract_max = 30
mg_gluta_max = 4
K_gluta_max = 80
aa_max = 1.5
peg_max = 2
hepes_max = 50
trna_max = 0.2
coa_max = 0.26
nad_max = 0.33
camp_max = 0.75
folinic_acid_max = 0.068
spemidine_max = 1
pga_max = 30
nucleo_mix_max = 1.5
DNA_max = 50
promoter_max = 10
RBS_max = 10
# 体积要求和库存-计算兼容2.5 nL的ECHO纳米滴
vol_max = 10.5
n = 5 # 最小浓度下滴数。即使在最低浓度下，我们也选择了至少5滴。
stock_extract = 89.5
stock_mg_gluta = 168
stock_K_gluta = 3360
stock_aa = 6
stock_peg = 40
stock_hepes = 2100
stock_trna = 84/n
stock_coa = 109.2/n
stock_nad = 138.6/n
stock_camp = 315/n
stock_folinic_acid = 28.56/n
stock_spermidine = 420/n
stock_pga = 1400
stock_nucleo = 630/n
stock_dna = 300
# Creating maximum extract:
maximum_extract = np.ones((1, 17), dtype = 'int')
max_sample_conc = [maximum_extract[0,0] * extract_max,
maximum_extract[0,1] * mg_gluta_max,
maximum_extract[0,2] * K_gluta_max,
maximum_extract[0,3] * aa_max,
maximum_extract[0,4] * peg_max,
maximum_extract[0,5] * hepes_max,
maximum_extract[0,6] * trna_max,
maximum_extract[0,7] * coa_max,
maximum_extract[0,8] * nad_max,
maximum_extract[0,9] * camp_max,
maximum_extract[0,10] * folinic_acid_max,
maximum_extract[0,11] * spemidine_max,
maximum_extract[0,12] * pga_max,
maximum_extract[0,13]* nucleo_mix_max,
maximum_extract[0,14]* DNA_max,
maximum_extract[0,15]* promoter_max,
maximum_extract[0,16]* RBS_max
]
# Creating autofluorescence extract extract:
autofluorescence_extract = np.ones((1, 17), dtype = 'int')
autofluorescence_sample_conc = [autofluorescence_extract[0,0] * extract_max,
autofluorescence_extract[0,1] * mg_gluta_max,
autofluorescence_extract[0,2] * K_gluta_max,
autofluorescence_extract[0,3] * aa_max,
autofluorescence_extract[0,4] * peg_max,
autofluorescence_extract[0,5] * hepes_max,
autofluorescence_extract[0,6] * trna_max,
autofluorescence_extract[0,7] * coa_max,
autofluorescence_extract[0,8] * nad_max,
autofluorescence_extract[0,9] * camp_max,
autofluorescence_extract[0,10] * folinic_acid_max,
autofluorescence_extract[0,11] * spemidine_max,
autofluorescence_extract[0,12] * pga_max,
autofluorescence_extract[0,13]* nucleo_mix_max,
autofluorescence_extract[0,14]* 0, # 自体荧光对照中无DNA
autofluorescence_extract[0,15]* promoter_max,
autofluorescence_extract[0,16]* RBS_max]
# 由数组reshape为二维数组
max_sample_conc = np.reshape(max_sample_conc, (1, 17))
autofluorescence_sample_conc = np.asarray(autofluorescence_sample_conc)
autofluorescence_sample_conc = np.reshape(autofluorescence_sample_conc, (1, 17))
ctrl_array = max_sample_conc
# 行合并 shape(2, 17)
ctrl_array = np.concatenate((ctrl_array, autofluorescence_sample_conc), axis = 0)
'''
定义除一个低值其余全是最大值
这定义了我们想要在初始板上测试的一组组合。所有浓度都尽可能达到最大值，只有一个浓度值最低。
因此，这产生了11种强制组合。我们还最大限度地添加了与所有内容的组合，以及NTP效果的另一个点
'''
all_max_except_one_low = max_sample_conc
extract = extract_conc[0]
peg = peg_conc[0]
hepes = hepes_conc[0]
dna = DNA_mix[1]
promoter = promoter_conc[0]
RBS = RBS_conc[0]
mg_gluta = mg_gluta_conc[-1]
K_gluta = K_gluta_conc[-1]
aa = aa_conc[-1]
trna = trna_conc[-1]
coa = coa_conc[-1]
nad = nad_conc[-1]
camp = camp_conc[-1]
folinic_acid = folinic_acid_conc[-1]
spermidine = spermidine_conc[-1]
pga = pga_conc[-1]
nucleo = nucleo_conc[-1]
this_sample_conc = [extract * extract_max,
0.1 * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
0.1 * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
0.1 * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
0.1 * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta* mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
0.1 * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
0.1 * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
0.1 * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
0.1 * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
0.1 * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
0.1 * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
0.1 * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
0.3 * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_max_except_one_low = np.concatenate((all_max_except_one_low, this_sample_conc), axis = 0)
# shape(13, 17)
print(all_max_except_one_low.shape)
'''
定义一个最大值其余全是最小值
这定义了我们想要在初始板上测试的一组组合。
这里，所有浓度都是尽可能的最小值，只有一个浓度是最大值。
因此，这产生了11种强制组合。我们还强制以最低值与所有试剂组合。
'''
extract = extract_conc[0]
peg = peg_conc[0]
hepes = hepes_conc[0]
dna = DNA_mix[1]
promoter = promoter_conc[0]
RBS = RBS_conc[0]
mg_gluta = mg_gluta_conc[0]
K_gluta = K_gluta_conc[0]
aa = aa_conc[0]
trna = trna_conc[0]
coa = coa_conc[0]
nad = nad_conc[0]
camp = camp_conc[0]
folinic_acid = folinic_acid_conc[0]
spermidine = spermidine_conc[0]
pga = pga_conc[0]
nucleo = nucleo_conc[0]
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = this_sample_conc
this_sample_conc = [extract * extract_max,
1 * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
1 * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
1 * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
1 * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta* mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
1 * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
1 * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
1 * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
1 * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
1 * spemidine_max,
pga * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
1 * pga_max,
nucleo * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
this_sample_conc = [extract * extract_max,
mg_gluta * mg_gluta_max,
K_gluta * K_gluta_max,
aa * aa_max,
peg * peg_max,
hepes * hepes_max,
trna * trna_max,
coa * coa_max,
nad * nad_max,
camp * camp_max,
folinic_acid * folinic_acid_max,
spermidine * spemidine_max,
pga * pga_max,
1 * nucleo_mix_max,
dna * DNA_max,
promoter * promoter_max,
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
all_min_except_high = np.concatenate((all_min_except_high, this_sample_conc), axis = 0)
# shape(12, 17)
print(all_min_except_high.shape)
# 其余部分将随机填充，避免重复
answer_array = np.concatenate((ctrl_array, all_max_except_one_low, all_min_except_high), axis = 0)
# shape(27, 17)
print(answer_array.shape)
# 查看随机填充的数组是否存在已经查找的数组中
def present_in_array_index(new_sample, array):
"""
Verify if a sample is present in an array.
"""
if array is None:
return(False, -1)
present = False
new_sample = np.reshape(np.array(new_sample), (1,17))
for i in range(array.shape[0]):
if np.array_equiv(array[i,:],new_sample):
present = True
break
return(present, i)
# 随机填充各组分浓度的函数
def generate_random_grid(array_to_avoid, sample_size = 100):
active_learning_array = array_to_avoid
if array_to_avoid is None:
answerSize = 0
else:
answerSize = active_learning_array.shape[0]
# Reagents not allowed to vary
extract = extract_conc[0]
peg = peg_conc[0]
hepes = hepes_conc[0]
dna = DNA_mix[1]
promoter = promoter_conc[0]
RBS = RBS_conc[0]
while answerSize < sample_size:
this_sample = np.random.randint(0, high=3, size=11, dtype='int')
this_sample_conc = [extract * extract_max,
mg_gluta_conc[this_sample[0]] * mg_gluta_max,
K_gluta_conc[this_sample[1]] * K_gluta_max,
aa_conc[this_sample[2]] * aa_max,
peg * peg_max,
hepes * hepes_max,
trna_conc[this_sample[3]] * trna_max,
coa_conc[this_sample[4]] * coa_max,
nad_conc[this_sample[5]] * nad_max,
camp_conc[this_sample[6]] * camp_max,
folinic_acid_conc[this_sample[7]] * folinic_acid_max,
spermidine_conc[this_sample[8]] * spemidine_max,
pga_conc[this_sample[9]] * pga_max,
nucleo_conc[this_sample[10]] * nucleo_mix_max,
dna * DNA_max, # not modified
promoter * promoter_max, # not modified
RBS * RBS_max]
this_sample_conc = np.reshape(this_sample_conc, (1, 17))
if not present_in_array_index(this_sample_conc, active_learning_array)[0]:
answerSize = answerSize + 1
if active_learning_array is None:
active_learning_array = this_sample_conc
else:
active_learning_array = np.concatenate((active_learning_array, this_sample_conc), axis = 0)
return(active_learning_array)
answer_array = generate_random_grid(answer_array, sample_size = 102)
# 保存筛选的种子数据集
headers = "extract; mg_gluta; K_gluta; aa; peg; hepes; trna; coa; nad; camp; folinic_acid; spemidin; pga; nucleo_mix; DNA; promoter; RBS"
np.savetxt("{}/initial_plate.csv".format(data_folder), answer_array, delimiter=";", header = headers,fmt='%.5f')
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