centOS7 安装sun javajdk删除OPENJDK

1：删除系统openjdk

通过 rpm -qa | grep java查看JDK相关的包，

然后通过命令删除下面三个相关的包：

rpm -e –nodeps java-1.7.0-openjdk-1.7.0.75-2.5.4.2.el7_0.x86_64

rpm -e –nodeps java-1.7.0-openjdk-headless-1.7.0.75-2.5.4.2.el7_0.x86_64

rpm -e –nodeps tzdata-java-2015a-1.el7.noarch

2：下载http://www.oracle.com/technetwork/java/javase/downloads/jdk10-downloads-4416644.html

如果下载为rpm格式[2]
rpm -ivh jdk-10.0.1_linux-x64_bin.rpm （推荐）

如果是tar.gz格式[3]
#如果需要解压到其他目录 可以在末尾处加上 -C /usr/local/
tar -zxvf jdk-10.0.1_linux-x64_bin.tar.gz

更改环境变量

vi /etc/profile

export JAVA_HOME=/usr/java/jdk-10.0.1/
export CLASSPATH=:$HADOOP_HOME/sbin:$HADOOP_HOME/bin:$JAVA_HOME/jre/lib/rt.jar:$JAVA_HOME/lib/dt.jar:$JAVA_HOME/lib/tools.jar
export PATH=:$PATH:$JAVA_HOME/bin

source /etc/profile

查看
java -version
java version “10.0.1” 2018-04-17
Java(TM) SE Runtime Environment 18.3 (build 10.0.1+10)
Java HotSpot(TM) 64-Bit Server VM 18.3 (build 10.0.1+10, mixed mode)

注：GATK3.8执行过程中java10.0会有问题推荐1.8版本

ref:
[1] https://www.cnblogs.com/CuteNet/p/3947193.html
[2] https://blog.csdn.net/fireblue1990/article/details/51097547
[3] https://blog.csdn.net/jzp630641095/article/details/72743000