POJ 3356 AGTC（最长公共子序列）

最新推荐文章于 2020-12-09 08:50:01 发布

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最新推荐文章于 2020-12-09 08:50:01 发布

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分类专栏： -----------OJ----------- 字符串 ----------专题---------- POJ 文章标签： ACM POJ DNA 字符串

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AGTC

Description

Let x and y be two strings over some finite alphabet A. We would like to transform x into y allowing only operations given below:

Deletion: a letter in x is missing in y at a corresponding position.
Insertion: a letter in y is missing in x at a corresponding position.
Change: letters at corresponding positions are distinct

Certainly, we would like to minimize the number of all possible operations.

Illustration
A G T A A G T * A G G C

| | |       |   |   | |

A G T * C * T G A C G C
Deletion: * in the bottom line
Insertion: * in the top line
Change: when the letters at the top and bottom are distinct

This tells us that to transform x = AGTCTGACGC into y = AGTAAGTAGGC we would be required to perform 5 operations (2 changes, 2 deletions and 1 insertion). If we want to minimize the number operations, we should do it like

A  G  T  A  A  G  T  A  G  G  C

|  |  |        |     |     |  |

A  G  T  C  T  G  *  A  C  G  C

and 4 moves would be required (3 changes and 1 deletion).

In this problem we would always consider strings x and y to be fixed, such that the number of letters in x is m and the number of letters in y is n where n ≥ m.

Assign 1 as the cost of an operation performed. Otherwise, assign 0 if there is no operation performed.

Write a program that would minimize the number of possible operations to transform any string x into a string y.

Input

The input consists of the strings x and y prefixed by their respective lengths, which are within 1000.

Output

An integer representing the minimum number of possible operations to transform any string x into a string y.

Sample Input

10 AGTCTGACGC
11 AGTAAGTAGGC

Sample Output

题意给你两个DNA序列求第一个第一个序列至少经过多次删除、替换或添加碱基得到第二个序列其实分析一下可以发现只要求出两个序列的最长公共子序列这部分就可以不动了然后较长序列的长度减去最长公共子序列的长度就是答案了

#include<cstdio>
#include<cstring>
#include<algorithm>
using namespace std;
const int N = 1005;
int la, lb, d[N][N];
char a[N], b[N];

void lcs()
{
    memset (d, 0, sizeof (d));
    for (int i = 1; i <= la; ++i)
        for (int j = 1; j <= lb; ++j)
            if (a[i] == b[j]) d[i][j] = d[i - 1][j - 1] + 1;
            else d[i][j] = max (d[i - 1][j], d[i][j - 1]);
}

int main()
{
    while (~scanf ("%d%s%d%s", &la, a + 1, &lb, b + 1))
    {
        lcs();
        printf ("%d\n", max (la, lb) - d[la][lb]);
    }
    return 0;
}