kpm代码使用步骤

接上篇

sudo apt-get install parallel

安装jdk1.8

安装R

sudo apt-get install r-base r-base-dev

安装R的依赖包

先安装sudo dpkg -i  ggplot2 .deb

//把functions.r里的data.out.head改改

出现错误

local:1/1613/100%/6.5s Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x000000079cb11000, 592375808, 0) failed; error='Cannot allocate memory' (errno=12)

64-Bit Server VM warning: INFO: os::commit_memory

加大JVM启动时的内存
java -Xmx1g  -Xms1g application
-Xmx1g 设置最大可用内存为1g

-Xms1g 设置内存初始化最小值1g

log4j:ERROR setFile(null,true) call failed

发生此问题的原因是启动Tomcat的用户权限不够，因为它要在opt目录下创建logs目录及相关日志文件；

以root用户启动Tomcat就没问题 了

出现错误

运行R脚本

http://f.dataguru.cn/thread-373242-1-1.html

Rscript makegrid.r出错如下

Loading required package: methods
Error in revalue(runs$alg, c(ODCN = "OD", KDPMD = "PM")) :
  x is not a factor or a character vector.
Calls: load.and.preprocess -> revalue

Execution halted

后来没有出现了

Loading required package: methods
Error: object 'legend1' not found

Execution halted

在 makegrid.r 将legend1改成legend

Loading required package: methods
Error in arrangeGrob(success, legend, heights = unit.c(unit(1, "npc") -  :
  could not find function "unit.c"
Calls: arrangeGrob -> arrangeGrob

Execution halted

在 makegrid.r 加入library(grid)