FBA voxel ROI 转换 fixel 以及 均值提取

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but the obvious starting point is the voxel2fixel command, which will project values from a 3D voxel image into the fixels underlying each voxel

 Extracting ROIs for fixel-based analysis - MRtrix3 Community

voxel2fixel Reslice_testmask2template.nii  fd   fd2  test.mif

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提取均值

 mrstats 20131207_LIUYUESAN.mif -mask fd2/test.mif > l.txt

https://community.mrtrix.org/t/extracting-rois-for-fixel-based-analysis/1614

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Hi Thijs,
Thanks for sharing this explanation. I tried implementing the following on my dataset:

mrstats subject001.mif -mask tractOI_binary.mif

which provides an error, because the mask file has dimensions 204 x 204 x 204 while subject001.mif has dimensions 571734 x 1 x 1.

(here, subject001.mif is found in the FD_smooth directory, although the same could be said if using any of the subject images in the FD directory).

I also tried using mrgrid to match the dimensions of tractOI_binary.mif with subject001.mif, and this resulted in an image containing only zeros…

Am I using the correct input images? And if so, what can be done to get a sensible result?

Cheers,
Arkiev

adsouza

Aug 24

I think I found my error. The -mask should use the output from tck2fixel (and not the output from tckmap)…

Thanks again!

Cheers,
Arkiev