ccnn

1.ImportError: no module named vigra

解决:

参考:https://anaconda.org/conda-forge/vigra

conda install -c conda-forge vigra

使用如上命令，利用anaconda2安装vigra：会使得conda自动安装python3.7，覆盖掉python2.7，从而导致错误：ImportError: No module named conda.cli

因此参考vigra网址：http://ukoethe.github.io/vigra/

Depending on the Python version in the active environment, conda will pick the correct VIGRA variant automatically. Packages are available for Python 2.7, 3.4, and 3.5. You can also create a new environment with a specific Python version (here: 3.4) by calling
安装：
    conda create -n vigra -c ukoethe python=3.4 vigra=1.11.1
每次运行之前激活vigra环境：
    source activate vigra

关闭虚拟环境

source deactivate 
或
conda deactivate

2.

File "src/test.py", line 32, in <module>
    import utils as utl
  File "/home/wanglin/workspace/deeplearning/ccnn/src/utils.py", line 6, in <module>
    from skimage.transform import resize
  File "/home/wanglin/anaconda2/lib/python2.7/site-packages/skimage/__init__.py", line 158, in <module>
    from .util.dtype import *
  File "/home/wanglin/anaconda2/lib/python2.7/site-packages/skimage/util/__init__.py", line 5, in <module>
    from .apply_parallel import apply_parallel
  File "/home/wanglin/anaconda2/lib/python2.7/site-packages/skimage/util/apply_parallel.py", line 8, in <module>
    import dask.array as da
  File "/home/wanglin/anaconda2/lib/python2.7/site-packages/dask/array/__init__.py", line 7, in <module>
    from .routines import (take, choose, argwhere, where, coarsen, insert,
  File "/home/wanglin/anaconda2/lib/python2.7/site-packages/dask/array/routines.py", line 253, in <module>
    @wraps(np.matmul)
  File "/home/wanglin/anaconda2/lib/python2.7/functools.py", line 33, in update_wrapper
    setattr(wrapper, attr, getattr(wrapped, attr))
AttributeError: 'numpy.ufunc' object has no attribute '__module__'
Time in seconds: 2

解决:

参考:https://stackoverflow.com/questions/54232495/attributeerror-numpy-ufunc-object-has-no-attribute-module

查看numpy版本

print numpy.__version__

是numpy-1.16.4

卸载掉这个版本的numpy,换成低版本的numpy-1.15.4

pip uninstall numpy
pip install numpy==1.15.4

(此设置是针对ccnn的caffe程序,如果运行pytorch和theano要修改回1.16.4.ps:只针对我的电脑配置,不适用于所有人)

3.

>>> import caffe
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/home/wanglin/workspace/caffe/python/caffe/__init__.py", line 1, in <module>
    from .pycaffe import Net, SGDSolver, NesterovSolver, AdaGradSolver, RMSPropSolver, AdaDeltaSolver, AdamSolver, NCCL, Timer
  File "/home/wanglin/workspace/caffe/python/caffe/pycaffe.py", line 13, in <module>
    from ._caffe import Net, SGDSolver, NesterovSolver, AdaGradSolver, \
ImportError: libhdf5.so.101: cannot open shared object file: No such file or directory

解决:

sudo cp /home/wanglin/anaconda2/lib/libhdf5.so.103.0.0 /usr/lib/libhdf5.so.101
sudo cp /home/wanglin/anaconda2/lib/libhdf5.so.103.0.0 /usr/lib/x86_64-linux-gnu/libhdf5.so.101