CT床架移除，人体组织区域提取

1. 流程示意图

1.1 将 所有大于0 的像素值，标记为1

1.2 计算连通分量，移除CT床架

import matplotlib.pyplot as plt
from PIL import Image
import numpy as np
img = Image.open("/Applications/Research/Experiments/SynSegExperiment/Model_Results/Plot/unet_feature_visualize/00051.png")
# img.show()
# plt.subplot(121)
# plt.imshow(img,cmap='gray')
img_np = np.array(img)
label_np = np.zeros_like(img_np).astype(np.uint8)
label_np[img_np>0]=1
# plt.subplot(122)
# plt.imshow(label*255,cmap='gray')
# plt.show()


import SimpleITK as sitk
import numpy as np
from skimage.morphology import label
from collections import OrderedDict
from batchgenerators.utilities.file_and_folder_operations import *

# label_path = "/Users/cengwankang/Downloads/Kidney_Stone/data_origin/ZengGuiXing/segmentation_only_stone.mha"
# label_path = "/Users/cengwankang/Downloads/shenzheng/li-xiao-mei/segmentation_stone.nii.gz"
# label_image = sitk.ReadImage(label_path)
# label_np = sitk.GetArrayFromImage(label_image).astype(np.uint8)
# print("label space: ", label_image.GetSpacing())
# volume_per_volume = np.prod(label_image.GetSpacing())


region_volume = OrderedDict()
label_map, numregions = label(label_np == 1, return_num=True)
region_volume['num_region'] = numregions
total_volume = 0
print("region num :", numregions)
max_region = 0
max_region_flag = 0
for l in range(1, numregions+1):
    region_volume[l] = np.sum(label_map==l) #* volume_per_volume
    if region_volume[l]>max_region:
        max_region = region_volume[l]
        max_region_flag = l
    total_volume += region_volume[l]
    print("region {0} volume is {1}".format(l, region_volume[l]))
post_label_np = label_np.copy()
post_label_np[label_map!=max_region_flag]=0
post_label_np[label_map==max_region_flag]=1

print("total region volume is :", total_volume)

import skimage
# img = skimage.data.binary_blobs(100)
# skimage.io.imshow(img)
# skimage.io.show()

kernel = skimage.morphology.disk(5)
img_dialtion = skimage.morphology.dilation(post_label_np, kernel)

plt.subplot(221)
plt.imshow(img,cmap='gray')
plt.subplot(222)
plt.imshow(label_np*255,cmap='gray')
plt.subplot(223)
plt.imshow(post_label_np*255,cmap='gray')
# plt.show()
plt.subplot(224)
plt.imshow(img_dialtion*255, cmap='gray')
plt.show()

连通分量计算相关代码

https://leetcode-cn.com/problems/max-area-of-island/description/