Gate用户手册（二）怎样运行Gate以及可视化

最新推荐文章于 2021-09-20 11:10:39 发布

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最新推荐文章于 2021-09-20 11:10:39 发布

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分类专栏：图像重建

本文链接：https://blog.csdn.net/qq_35554139/article/details/99411523

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原文通道：http://wiki.opengatecollaboration.org/index.php/Users_Guide:How_to_run_Gate#Interactive_mode

原文通道：http://wiki.opengatecollaboration.org/index.php/Users_Guide:Visualization#Visualization_with_OpenGL

一、怎样运行Gate

互动模式

输入

$ Gate

输出类似下面的界面

1  [G4] *************************************************************
2  [G4]  Geant4 version Name: geant4-10-03    (4-December-2015)
3  [G4]                       Copyright : Geant4 Collaboration
4  [G4]                       Reference : NIM A 506 (2003), 250-303
5  [G4]                             WWW : http://cern.ch/geant4
6  [G4] *************************************************************
7  [G4] 
8  [Core-0] Initialization of geometry
9  [Core-0] Initialization of physics
10 [Core-0] Initialization of actors
11 [Core-0] 
12 [Core-0] **********************************************************************
13 [Core-0]  GATE version name: gate_v8.0                                        
14 [Core-0]                     Copyright : OpenGATE Collaboration                
15 [Core-0]                     Reference : Phys. Med. Biol. 49 (2004) 4543-4561  
16 [Core-0]                     Reference : Phys. Med. Biol. 56 (2011) 881-901    
17 [Core-0]                     WWW : http://www.opengatecollaboration.org        
18 [Core-0] **********************************************************************
19 [Core-0] 
20 [Core-0] You are using Geant4 version 10.3.0
21 Idle>

输入ls,得到Gate可用的命令目录

1	Idle> ls
2	Command directory path : /
3	 Sub-directories :
4	   /control/   UI control commands.
5	   /units/   Available units.
6         /process/   Process Table control commands.
7         /gate/   GATE detector control.
8         /particle/   Particle control commands.
9         /geometry/   Geometry control commands.
10        /tracking/   TrackingManager and SteppingManager control commands.
11        /event/   EventManager control commands.
12        /cuts/   Commands for G4VUserPhysicsList.
13        /run/   Run control commands.
14        /random/   Random number status control commands.
15        /material/   Commands for materials
16        /hits/   Sensitive detectors and Hits
17        /vis/   Visualization commands.
18        /digi/   DigitizerModule
19        /gps/   ...Title not available...
Commands :

查看/control,输入 ls /control

1      Idle> ls /control
2      Command directory path : /control/
3
4
5      Guidance :
6      UI control commands.
7
8       Sub-directories : 
9         /control/cout/   Control cout/cerr for local thread.
10        /control/matScan/   Material scanner commands.
11      Commands : 
12        macroPath * Set macro search pathwith colon-separated list.
13        execute * Execute a macro file.
14        loop * Execute a macro file more than once.
15        foreach * Execute a macro file more than once.
16        suppressAbortion * Suppress the program abortion caused by G4Exception.
17        verbose * Applied command will also be shown on screen.
18        saveHistory * Store command history to a file.
19        stopSavingHistory * Stop saving history file.
20        alias * Set an alias.
21        unalias * Remove an alias.
22        listAlias * List aliases.
23        getEnv * Get a shell environment variable and define it as an alias.
24        getVal * Get the current value of the UI command and define it as an alias.
25        echo * Display the aliased value.
26        shell * Execute a (Unix) SHELL command.
27        manual * Display all of sub-directories and commands.
28        createHTML * Generate HTML files for all of sub-directories and commands.
29        maximumStoredHistory * Set maximum number of stored UI commands.
30        if * Execute a macro file if the expression is true.
31        doif * Execute a macro file if the expression is true.
32        add * Define a new alias as the sum of two values.
33        subtract * Define a new alias as the subtraction of two values.
34        multiply * Define a new alias as the multiplification of two values.
35        divide * Define a new alias as the division of two values.
36        remainder * Define a new alias as the remainder of two values.

*代表这是最后一级目录。

执行mac文件

 1	Idle> /control/execute myScanner.mac

注意，这个命令只是执行.mac文件中所有的命令，而不是启动一个仿真，启动仿真的命令是

/gate/application/startDAQ

这个命令一般都在.mac文件最后一行

其他命令：

退出

Idle> exit

帮助

$ Gate -h

qt模式打开

输入

$ Gate --qt

如果你在qt中session文本框中输入/control/execute benchPET.mac，你会看到下面

为了使用QT，你要在Gate宏中输入

/vis/open OGLSQt

注意：QT模式是仿真后的结果，你执行的操作都是在仿真后的操作

二、可视化

介绍

Gate中的可视化和geant4中的可视化功能相同，geant4中大部分的可视化操作可以运用到Gate中

重要提示

在用opengl打开图像时，推荐使用OpenGL Immediate-X viewer而不是常用的Stored-X viewer

命令行

使用geat4中的可视化命令进行可视化操作，如下面所述

用openGL可视化

最好的方法是敲/vis/open OGL让openGL自己选择模式。

openGL操作的代码http://geant4.slac.stanford.edu/Presentations/vis/G4OpenGLTutorial/G4OpenGLTutorial.html

例如：如果你想要放大某一部位，你可以用pan命令来放大

/vis/viewer/panTo -5 -1
/vis/viewer/zoom 4.

# V I E W E R #
/vis/open OGL
# define the zoom factor
/vis/viewer/zoom 1.5
# Set the viewing angle
/vis/viewer/set/viewpointThetaPhi 5 60
# Set the drawing style 
/vis/viewer/set/style surface
# Tell the viewer to draw the volumes 
/vis/drawVolume
# The trajectories for each run should be drawn together 
# don't store trajectories = 0; store trajectories = 1 
/tracking/storeTrajectory 1
# Requests viewer to refresh hits, tracks, etc., at end of event. 
# Or to accumulate drawings. Detector remains or is redrawn. 
/vis/scene/endOfEventAction accumulate

下面的是Gate中额外添加的选项

# draw object in WireFrame Mode
/gate/block/vis/forceWireframe

# draw object to appear as a solid 
/gate/block/vis/forceSolid

# define object color
/gate/block/vis/setColor blue

任何时候都可以用下面命令手动进行几何重建，

/gate/geometry/rebuild

图像的可视化

Gate从7.0版本之后就可以用OpenGL打开图像，但是只能在快速模式中

快速模式

/vis/open OGLI

存储模式

注：只翻译了OpenGL部分，省略部分请参考原文