feature extraction
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position-correlation scoring feature(PCSF)
2020-11_Theory in Biosciences_Eukaryotic and prokaryotic promoter prediction using hybrid approachhttps://link.springer.com/article/10.1007/s12064-010-0114-8原文:The PWM can be constructed by counting the frequencies of oligonucleotides in conserved sites of原创 2022-06-10 11:02:55 · 165 阅读 · 0 评论 -
NPSE(Nucleotide pair spectrum encoding)
NPSENPSE 策略计算窗口内所有可能的 k 间隔核苷酸对的出现次数。特征表示:fkNPSE={{AT}0,{AA}0,...,{AA}k,...,{CC}k}f^{NPSE}_k=\{\{AT\}_0,\{AA\}_0,...,\{AA\}_k,...,\{CC\}_k\}fkNPSE={{AT}0,{AA}0,...,{AA}k,...,{CC}k}变量说明:kkk:表示窗口大小{AA}k\{AA\}_k{AA}k:表示k间隔核苷酸对特征维度:16×(k+1)16\tim原创 2022-04-06 20:26:27 · 522 阅读 · 0 评论 -
Mismatch K-tuple
Mismatch K-tupleMismatch K-tuple表明连续 k 元组中允许出现m(m<k)个错误说法一StackTADB: a stacking-based ensemble learning model for predicting the boundaries of topologically associating domains (TADs) accurately in fruit flies特征表示:fkMis={{Ak}1,{Ak−1T1}1,{Ak−2T2}1原创 2022-04-06 17:02:24 · 281 阅读 · 0 评论