Example PBS Script

#PBS -S /bin/sh

#PBS -l nodes= 12 :ppn= 8 ,walltime= 24 : 00 : 00

#PBS -m abe

#PBS -M username @your .address.here

#PBS -N jobname

 

# Create scratch directory on local disk

mkdir -p /scratch/general/$USER/$PBS_JOBID

 

# Change to working directory

cd /scratch/general/$USER/$PBS_JOBID

 

# Copy data files scratch directory

cp $HOME/working_directory/data_files /scratch/general/$USER/$PBS_JOBID

 

# Execute parallel job

# include /uufs/updraft.arches/sys/pkg/mpich/std/bin in your path environment variable

/usr/bin/mpirun -np 96 -machinefile $PBS_NODEFILE $HOME/working_directory/a.out > outputfile

  

# Copy files back home and cleanup

cp * $HOME/working_directory && cd .. && rm -rf /scratch/general/$USER/$PBS_JOBID