MVAPICH2使用小记

mvapich2-1.9a 安装使用小结

ssh 登录ri cse 节点

rpm -qa | grep mvapich2
wget http://mvapich.cse.ohio-state.edu/download/mvapich2/mvapich2-1.9a.tgz
tar -xzf mvapich2-1.9a.tgz
./configure 无参数，之后make install出错
./configure --prefix=/home/shir/mv/install
make  --> make install

salloc -N 2 //申请2个节点

squeue -u shir  //查看我的节点名字

JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)

79867 Compute bash shir R 0:08 2 node[136-137]

touch hosts
#hosts file, including nodes from "squeue -u shir"
node136
node137
../../bin/mpirun_rsh -np 2 -hostfile hosts ./osu_bw
遇到两个问题
1. 要求输入ssh远程节点密码
solution: ssh-keygen
cat .ssh/id_rsa.pub >> .ssh/authorized_keys
2. bin文件路径问题

释放节点 scancel --jobid

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mingzhe的bashrc
# .bashrc
ulimit -c unlimited

# Source global definitions
if [ -f /etc/bashrc ]; then
. /etc/bashrc
fi

# User specific aliases and functions
MPIHOME=/home/limin/mvapich/exp6/gbuild-4.4.6
HELP_TOOL=/home/limin/help_tools
PATH=$PATH:$HELP_TOOL/bin:$MPIHOME/bin:$HELP_TOOL/eztrace/bin:/$HELP_TOOL/libpng/bin:/home/limin/profile-tools/pli386/bin:$HELP_TOOL/cmake/bin:$HELP_TOOL/mxml/bin:$HELP_TOOL/scalasca/bin:/home/limin/profile-tools/pdtoolkit-3.17/x86_64/lib:$HELP_TOOL/ompp/bin:$HELP_TOOL/ipm/bin:/home/limin/help_tools/openshmem/bin


加上 PATH=$PATH:/path/to/mv2/install/bin
之后 source ~/.bashrc