python rpy2 setseed,rpy2: RPy2是一个非常简单、健壮的R语言的Python调用接口 - 木兰确实...

Python -> R bridge

The project's webpage is here: https://rpy2.github.io/

Installation

pip should work out of the box:

pip installrpy2

The package has optional depencies providing

specific functionalities not otherwise required to use the rest of rpy2.

For example, to be able to run the unit tests:

pip installrpy2[test]

To install all dependencies, use:

pip installrpy2[all]

The package is known to compile on Linux, MacOSX

(provided that developper tools are installed, and you are ready

figure out how by yourself). The situation is currently a little

more complicated on Windows. Check the issue tracker.

In case you find yourself with this source without any idea

of what it takes to compile anything on your platform, try first

python setup.py install

Non system-R installations

Whenever R is in not installed in a system location, the system might not

know where to find the R shared library.

If R is in the PATH, that is entering R on the command line successfully starts

an R terminal, but rpy2 does not work because of missing C libraries, try the following

before starting Python:

exportLD_LIBRARY_PATH="$(python -m rpy2.situation LD_LIBRARY_PATH)":${LD_LIBRARY_PATH}

Docker

To try rpy2 in an ipython console:

docker run --rm -p 8888:8888 rpy2/jupyter-ubuntu:master-20.04 ipython

To run a jupypter notebook on port 8888:

docker run --rm -p 8888:8888 rpy2/jupyter-ubuntu:master-20.04

More information about Docker images can be found in the

docker image repository.

Images with jupyter are can be used with

mybinder.

Documentation

Documentation is available either in the source tree (doc/),

or online.

Testing

rpy2 uses pytest, with the plugin pytest-cov for code coverage. To

test the package from the source tree, either to check and installation

on your system or before submitting a pull request, do:

pytest tests/

For code coverage, do:

pytest --cov=rpy2.rinterface_lib \

--cov=rpy2.rinterface \

--cov=rpy2.ipython \

--cov=rpy2.robject \

tests

For more options, such as how to run specify tests, please refer to the pytest

documentation.

License

RPy2 can be used under the terms of the GNU

General Public License Version 2 or later (see the file

gpl-2.0.txt). This is the very same license R itself is released under.