在Pandas中,有没有办法以表格格式有效地提取HDFStore中存在的所有MultiIndex索引?
我可以使用where =来有效地选择(),但我想要所有索引,而不是所有列.我也可以选择()使用iterator = True来保存RAM,但这仍然意味着从磁盘读取几乎所有的表,所以它仍然很慢.
我一直在store.root..table.*东西打猎,希望我能得到一个索引值列表.我是在正确的轨道上吗?
计划B将保留一个较短的MultiIndex DataFrame,它只包含每次附加主数据时附加的空DataFrame.我可以检索它并使索引比主要索引便宜得多.虽然不太优雅.
解决方法:
创建一个多索引df
In [35]: df = DataFrame(randn(100000,3),columns=list('ABC'))
In [36]: df['one'] = 'foo'
In [37]: df['two'] = 'bar'
In [38]: df.ix[50000:,'two'] = 'bah'
In [40]: mi = df.set_index(['one','two'])
In [41]: mi
Out[41]:
MultiIndex: 100000 entries, (foo, bar) to (foo, bah)
Data columns (total 3 columns):
A 100000 non-null values
B 100000 non-null values
C 100000 non-null values
dtypes: float64(3)
将其存储为表格
In [42]: store = pd.HDFStore('test.h5',mode='w')
In [43]: store.append('df',mi)
get_storer将返回存储的对象(但不检索数据)
In [44]: store.get_storer('df').levels
Out[44]: ['one', 'two']
In [2]: store
Out[2]:
File path: test.h5
/df frame_table (typ->appendable_multi,nrows->100000,ncols->5,indexers->[index],dc->[two,one])
索引级别创建为data_columns,这意味着您可以在选择中使用它们
这是如何只选择索引
In [48]: store.select('df',columns=['one'])
Out[48]:
MultiIndex: 100000 entries, (foo, bar) to (foo, bah)
Empty DataFrame
选择单个列并将其作为mi-frame返回
In [49]: store.select('df',columns=['A'])
Out[49]:
MultiIndex: 100000 entries, (foo, bar) to (foo, bah)
Data columns (total 1 columns):
A 100000 non-null values
dtypes: float64(1)
要将单个列选择为Series(也可以是索引,因为它们存储为列).这将非常快.
In [2]: store.select_column('df','one')
Out[2]:
0 foo
1 foo
2 foo
3 foo
4 foo
5 foo
6 foo
7 foo
8 foo
9 foo
10 foo
11 foo
12 foo
13 foo
14 foo
...
99985 foo
99986 foo
99987 foo
99988 foo
99989 foo
99990 foo
99991 foo
99992 foo
99993 foo
99994 foo
99995 foo
99996 foo
99997 foo
99998 foo
99999 foo
Length: 100000, dtype: object
如果你真的想要最快的选择只有索引
In [4]: %timeit store.select_column('df','one')
100 loops, best of 3: 8.71 ms per loop
In [5]: %timeit store.select('df',columns=['one'])
10 loops, best of 3: 43 ms per loop
或者获得完整的索引
In [6]: def f():
...: level_1 = store.select_column('df','one')
...: level_2 = store.select_column('df','two')
...: return MultiIndex.from_arrays([ level_1, level_2 ])
...:
In [17]: %timeit f()
10 loops, best of 3: 28.1 ms per loop
如果你想要每个级别的值,这是一种非常快速的方法
In [2]: store.select_column('df','one').unique()
Out[2]: array(['foo'], dtype=object)
In [3]: store.select_column('df','two').unique()
Out[3]: array(['bar', 'bah'], dtype=object)
标签:python,pandas,hdfstore
来源: https://codeday.me/bug/20190517/1121943.html