将不同显微镜图片的格式转换为通用格式

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详细见zhong‘s blog

A way to convert bioimage in batch using img

The useful small tool is bioimge convert, you can download it from this link.

The introduction of the software in the above website is:

This application is a command line image conversion utility. It can read and write many image formats, extract ROI and meta-data stored in images. Accepted image formats are: BioRad PIC, TIFF, OME-TIFF, Metamorph STK (uncompressed and LZW compressed), Fluoview, Olympus Image Binary (OIB), Carl Zeiss LSM 5, PSIA TIFF, Nanoscope II/III, JPEG, PNG, BMP, IBW, OME, RAW and video: QuickTime, AVI, MPEG1/2/4, Flash, etc.

The example to convert the olympus image binary file to tiff file is:

imgcnv -i inputfile.oib -o outputfile.tif -t TIFF

The way to implement batch convert which i used was based on python:

import os for root, path, filelist in os.walk('./'): for file in filelist: index = file.find('.oib') if index == -1: continue newname = file[:index] + '.tif' commandline = 'imgcnv -i ' + root + '/' + file + ' -o ' +
root + '/' + newname + ' -t TIFF' os.system(commandline)

转载于:https://my.oschina.net/grassyue/blog/182862