circos
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circos - Session 2 - Lesson 2 - Histograms
create data track, draw a histogram, which is a plot-type track. Two kinds of data tracks : plots and links.create an image with one histogram#session/2/2/etc/circos.conf<plots>type ...原创 2018-11-29 11:56:34 · 217 阅读 · 0 评论 -
circos-session 1 Lesson 11 Ideogram,Color,Scale,Order and Orientation
data tracksmanipulate what ideogram are displayed, their order and orientationFiltering Ideogramswith a "-" prefix, remove several ideograms from the displaye.g.#./etc/ideogram.confchromos...原创 2018-11-27 18:18:29 · 217 阅读 · 0 评论 -
circos -session 1 Lesson 12 Relative and Absolute Ticks
#../../etc/ideogram.conf the following are the default settings. Here for the convenience of comparing the default settings and the new settings with suffix * difference, some unrelated settings ar...原创 2018-11-28 16:25:01 · 124 阅读 · 0 评论 -
circos- Session 1 Lesson 5 Ideogram Order
to draw a subset of chromosomes , need to change chromosomes_display_default to no . all of the chromosomes that were defined in the karyotype were shown. this is the default behaviour.to change ...原创 2018-11-23 15:43:18 · 127 阅读 · 0 评论 -
circos-Session 1 Lession 4 - Ideogram Selection
To draw a subset of chromosomes, you need to change chromosomes_display_default to no.only to show chromosomes chr1, chr2, chr3karyotype = ../data/karyotype.5chr.txtchromosomes_units ...原创 2018-11-23 13:15:11 · 257 阅读 · 0 评论 -
circos- Session 1 Lesson 3 Changing ideogram scale
scale adjustment is defined in the circos.conf using the chromosomes_scale parameter. The syntax of the value for this parameter is : chromosomes_scale = chr1 = 0,2 , chr2 =2 , chr3 = 10 . which ...原创 2018-11-22 18:26:16 · 167 阅读 · 0 评论 -
circos- Session 1 Lesson 2 relative ideogram spacing
relative ideogram spacingu , absolute value , relative to the value of chromosomes_unitsr , relative to the total size(size/number of chromosomes) of all displayed ideograms. can keep the sa...原创 2018-11-22 16:42:49 · 139 阅读 · 0 评论 -
circos - Session 2 - Lesson 1 - Ideogram, Tick, Grid and Label Layout
review configuration file for this lesson#shared by all lessons in this session<<include ../etc/karyotype.and.layout.conf>><<include ../etc/ideogram.conf>><<include...原创 2018-11-28 18:35:46 · 162 阅读 · 0 评论