I am studying nonlinear curvefit with python.
I made example like below.
But the optimized plot is not drawn well
plt.plot(basketCont, fittedData)
I guess the optimized parametes are not good also.
Could you give some recommends? Thank you.
import matplotlib
matplotlib.use('Qt4Agg')
import matplotlib.pyplot as plt
from matplotlib.pyplot import cm
import numpy as np
from scipy.optimize import curve_fit
def func(x, a, b, c):
return a - b* np.exp(c * x)
baskets = np.array([475, 108, 2, 38, 320])
scaling_factor = np.array([95.5, 57.7, 1.4, 21.9, 88.8])
popt,pcov = curve_fit(func, baskets, scaling_factor)
print (popt)
print (pcov)
basketCont=np.linspace(min(baskets),max(baskets),50)
fittedData=[func(x, *popt) for x in basketCont]
fig1 = plt.figure(1)
plt.scatter(baskets, scaling_factor, s=5)
plt.plot(basketCont, fittedData)
plt.grid()
plt.show()
解决方案
I personally could not get a good fit to your data using the equation you posted, however the Hill sigmoidal equation gave a good fit. Here is the Python code for the graphical fitter I used.
import numpy, scipy, matplotlib
import matplotlib.pyplot as plt
from scipy.optimize import curve_fit
import warnings
baskets = numpy.array([475.0, 108.0, 2.0, 38.0, 320.0])
scaling_factor = numpy.array([95.5, 57.7, 1.4, 21.9, 88.8])
# rename data for simpler code re-use later
xData = baskets
yData = scaling_factor
def func(x, a, b, c): # Hill sigmoidal equation from zunzun.com
return a * numpy.power(x, b) / (numpy.power(c, b) + numpy.power(x, b))
# these are the same as the scipy defaults
initialParameters = numpy.array([1.0, 1.0, 1.0])
# do not print unnecessary warnings during curve_fit()
warnings.filterwarnings("ignore")
# curve fit the test data
fittedParameters, pcov = curve_fit(func, xData, yData, initialParameters)
modelPredictions = func(xData, *fittedParameters)
absError = modelPredictions - yData
SE = numpy.square(absError) # squared errors
MSE = numpy.mean(SE) # mean squared errors
RMSE = numpy.sqrt(MSE) # Root Mean Squared Error, RMSE
Rsquared = 1.0 - (numpy.var(absError) / numpy.var(yData))
print('Parameters:', fittedParameters)
print('RMSE:', RMSE)
print('R-squared:', Rsquared)
print()
##########################################################
# graphics output section
def ModelAndScatterPlot(graphWidth, graphHeight):
f = plt.figure(figsize=(graphWidth/100.0, graphHeight/100.0), dpi=100)
axes = f.add_subplot(111)
# first the raw data as a scatter plot
axes.plot(xData, yData, 'D')
# create data for the fitted equation plot
xModel = numpy.linspace(min(xData), max(xData))
yModel = func(xModel, *fittedParameters)
# now the model as a line plot
axes.plot(xModel, yModel)
axes.set_xlabel('X Data') # X axis data label
axes.set_ylabel('Y Data') # Y axis data label
plt.show()
plt.close('all') # clean up after using pyplot
graphWidth = 800
graphHeight = 600
ModelAndScatterPlot(graphWidth, graphHeight)