deepToolss 3.3.0用户手册(未完)

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bamCoverage --help

Parameters of decrease the run time

numberofProcessors

多进程 e.g. --numberofProcessors 10

region

仅对基因组某个位置处理 e.g. --region chr2 or --region chr2:100000-200000


Filtering BAMs while processing

ignoreDuplicates

Reads with the same orientation and start position will be considered only once. If reads are paired, the mate is also evaluated

minMappingQuality

Only reads with a mapping quality score of at least this are considered

samFlagInclude

Include reads based on the SAM flag.

samFlagExclude

Exclude reads based on the SAM flags

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