解压DICOM

背景：在DICOM文件解析图片的过程中发现，被压缩过的DICOM文件不能解析出图片。因此需要先解压，后解析图片。

解压:

1.导入jar包:

<dependency>
            <groupId>org.dcm4che</groupId>
            <artifactId>dcm4che-image</artifactId>
            <version>5.23.1</version>
        </dependency>
        <dependency>
            <groupId>org.dcm4che</groupId>
            <artifactId>dcm4che-core</artifactId>
            <version>5.23.1</version>
        </dependency>
        <dependency>
            <groupId>org.dcm4che</groupId>
            <artifactId>dcm4che-imageio</artifactId>
            <version>5.23.1</version>
        </dependency>
        <dependency>
            <groupId>org.dcm4che</groupId>
            <artifactId>dcm4che-imageio-opencv</artifactId>
            <version>5.23.1</version>
        </dependency>
        <dependency>
            <groupId>com.github.nroduit</groupId>
            <artifactId>weasis-core-img</artifactId>
            <version>4.5.0</version>
        </dependency>
        <dependency>
            <groupId>com.github.nroduit</groupId>
            <artifactId>weasis-dicom-tools</artifactId>
            <version>5.22.4</version>
        </dependency>

2.将操作系统对应的opencv_java文件放在某路径下，例如/Users/allin918/Desktop

 

3.设置VM options：-Djava.library.path=/Users/allin918/Desktop

 

4.解压代码:

package org.example;

import org.dcm4che3.data.Attributes;
import org.dcm4che3.data.UID;
import org.dcm4che3.imageio.codec.Transcoder;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.nio.file.Files;

public class DCMTest {

    public static void main(String[] args) throws IOException {
        File src = new File("/Users/allin918/Desktop/dcm/00020010-58.dcm"); //带有压缩协议的dicom原始文件
        File dest = new File("/Users/allin918/Desktop/dcm/copy00020010-58.dcm"); //解压成未压缩的dicom目标文件
        try {
            transcodeWithTranscoder(src, dest);
        } catch (IOException e) {
            e.printStackTrace();
        }
    }

    public static void transcodeWithTranscoder(File src, final File dest) throws IOException {
        try (Transcoder transcoder = new Transcoder(src)) {
            transcoder.setDestinationTransferSyntax(UID.ExplicitVRLittleEndian);
            transcoder.setIncludeFileMetaInformation(true);
            transcoder.transcode(new Transcoder.Handler(){
                @Override
                public OutputStream newOutputStream(Transcoder transcoder, Attributes dataset) throws IOException {
                    return new FileOutputStream(dest);
                }
            });
        } catch (Exception e) {
            Files.deleteIfExists(dest.toPath());
            throw e;
        }
    }
}

解析图片:

1.导入jar包

<dependency>
   <groupId>net.imagej</groupId>
   <artifactId>ij</artifactId>
   <version>1.49v</version>
</dependency>

2.解析图片代码:

package org.example;

import ij.plugin.DICOM;
import lombok.extern.slf4j.Slf4j;
import javax.imageio.ImageIO;
import java.awt.image.BufferedImage;
import java.io.File;

@Slf4j
public class DCMTest {

    public static void dcm2jpg(String filePath) {
        try {
            DICOM dicom = new DICOM();
            dicom.run(filePath);
            BufferedImage bi = (BufferedImage) dicom.getImage();
            String imagePath = filePath;
            ImageIO.write(bi, "jpg", new File(imagePath));
        } catch (Exception e) {
            log.info("DCMUtils.create2错误:{}",e);
        }
    }

}