shell脚本学习之并联运行和串联运行

1.先看fastp01.sh

#!/bin/bash
for i in 1 2
do
	fastp -q 15 -u 40 -i wt_normal0${i}_1.fastq.gz -I wt_normal0${i}_2.fastq.gz -o out.wt_normal0${i}_1.fastq.gz -O out.wt_normal0${i}_2.fastq.gz
	mkdir $i
	fastp -q 15 -u 40 -i wt_drought0${i}_1.fastq.gz -I wt_drought0${i}_2.fastq.gz -o out.wt_drought0${i}_1.fastq.gz -O out.wt_drought0${i}_2.fastq.gz
done

运行顺序是串联运行，先运行

fastp -q 15 -u 40 -i wt_normal01_1.fastq.gz -I wt_normal01_2.fastq.gz -o out.wt_normal01_1.fastq.gz -O out.wt_normal01_2.fastq.gz

然后运行

mkdir 1

然后运行

fastp -q 15 -u 40 -i wt_drought01_1.fastq.gz -I wt_drought01_2.fastq.gz -o out.wt_drought01_1.fastq.gz -O out.wt_drought01_2.fastq.gz

运行到这里，第一轮结束，然后开启第二轮运行

2.再看fastp02.sh

	fastp -q 15 -u 40 -i wt_normal0${i}_1.fastq.gz -I wt_normal0${i}_2.fastq.gz -o out.wt_normal0${i}_1.fastq.gz -O out.wt_normal0${i}_2.fastq.gz &
	mkdir $i &
	fastp -q 15 -u 40 -i wt_drought0${i}_1.fastq.gz -I wt_drought0${i}_2.fastq.gz -o out.wt_drought0${i}_1.fastq.gz -O out.wt_drought0${i}_2.fastq.gz
done

运行顺序是：

	fastp -q 15 -u 40 -i wt_normal01_1.fastq.gz -I wt_normal01_2.fastq.gz -o out.wt_normal01_1.fastq.gz -O out.wt_normal01_2.fastq.gz &
	mkdir 1 &
	fastp -q 15 -u 40 -i wt_drought0${i}_1.fastq.gz -I wt_drought01_2.fastq.gz -o out.wt_drought01_1.fastq.gz -O out.wt_drought01_2.fastq.gz
done

这三个命令同时运行，等这三个命令结束后，再开启第二轮循环的三个命令同时运行