背景:
接到通知,需要在集群中安装gatk4.1.9.0的安装包。
在集群中,我们使用的conda做环境的隔离。
一、使用conda 新建环境
conda create -n gatk-4.1.9.0
报出error:
conda 创建env CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://repo.anaconda.com/pkgs/mai
折腾许久,亲测可行的解决办法:
删除-default行,就可以了,
搞之前建议先备份condarc ,防止出错
[root@localhost ~]# cat ~/.condarc.bak
auto_activate_base: false
channels:
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
- https://conda.anaconda.org/IBMDecisionOptimization/linux-64
- http://conda.anaconda.org/dranew
- defaults # 将此行删除
show_channel_urls: true
二、修改完之后,正常安装即可
conda create -n "gatk-4.1.9"
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /conda/envs/gatk-4.1.9
Proceed ([y]/n)? y