将医学dicom文件转nii文件

# #coding=utf-8
import SimpleITK as sitk
'''
功能：读取filepath下的dcm文件
返回值：读取得到的SimpleITK.SimpleITK.Image类
其他说明：  file = sitk.ReadImage(filepath)
            获取基本信息，大小，像素间距，坐标原点，方向
            file.GetSize()
            file.GetOrigin()
            file.GetSpacing()
            file.GetDirection()
'''


def readdcm(filepath):
    # filepath = "./T2"
    series_id = sitk.ImageSeriesReader.GetGDCMSeriesIDs(filepath)
    print(series_id)
    # print('oooo')
    series_file_names = sitk.ImageSeriesReader.GetGDCMSeriesFileNames(filepath, series_id[0])
    # print(series_file_names)
    # print('wwwww')
    series_reader = sitk.ImageSeriesReader()  # 读取数据端口
    # print(series_reader)
    # print('kkkk')
    series_reader.SetFileNames(series_file_names)  # 读取名称
    images = series_reader.Execute()  # 读取数据
    # print(images)
    # print('eeeee')
    # print(images.GetSpacing())
    # sitk.WriteImage(images, "T2_1.nii.gz")#保存为nii
    return images


if __name__ == '__main__':
    filepath = "201015/"  # 保存路径
    dcm_images = readdcm(filepath)  # 读取文件
    sitk.WriteImage(dcm_images, "111.nii.gz")  # 保存为nii

或者使用软件MRIcron