Process Thread 0:
Traceback (most recent call last):
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/process.py", line 258, in _bootstrap
self.run()
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/process.py", line 93, in run
self._target(*self._args, **self._kwargs)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/site-packages/mageck/mlemultiprocessing.py", line 39, in thread_p_func
returndict[tgid]=tginst
File "<string>", line 2, in __setitem__
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/managers.py", line 756, in _callmethod
conn.send((self._id, methodname, args, kwds))
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/connection.py", line 206, in send
self._send_bytes(_ForkingPickler.dumps(obj))
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/connection.py", line 397, in _send_bytes
self._send(header)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/connection.py", line 368, in _send
n = write(self._handle, buf)
BrokenPipeError: [Errno 32] Broken pipe
INFO @ Sat, 10 Dec 2022 15:19:10: Thread 0 completed.
INFO @ Sat, 10 Dec 2022 15:19:10: All threads completed.
Traceback (most recent call last):
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/managers.py", line 749, in _callmethod
conn = self._tls.connection
AttributeError: 'ForkAwareLocal' object has no attribute 'connection'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/root/.conda/envs/mageck-vispr/bin/mageck", line 66, in <module>
main();
File "/root/.conda/envs/mageck-vispr/bin/mageck", line 43, in main
args=crisprseq_parseargs();
File "/root/.conda/envs/mageck-vispr/lib/python3.6/site-packages/mageck/argsParser.py", line 246, in crisprseq_parseargs
mageckmle_main(parsedargs=args); # ignoring the script path, and the sub command
File "/root/.conda/envs/mageck-vispr/lib/python3.6/site-packages/mageck/mlemageck.py", line 182, in mageckmle_main
iteratenbem_permutation_by_nsg(allgenedict,args,size_f=size_f)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/site-packages/mageck/mlemultiprocessing.py", line 278, in iteratenbem_permutation_by_nsg
last_permuted_beta=iteratenbem_permutation(this_genedict,args,sg_per_gene=ngene,background_genedict=bg_genedict,nround=args.permutation_round,allgenedict=genedict,removeoutliers=args.remove_outliers,size_factor=size_f)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/site-packages/mageck/mlemultiprocessing.py", line 194, in iteratenbem_permutation
runem_multiproc(genedictcopy,args,nproc=args.threads,argsdict=argsdict)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/site-packages/mageck/mlemultiprocessing.py", line 115, in runem_multiproc
for tgid in list(retdict.keys()):
File "<string>", line 2, in keys
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/managers.py", line 753, in _callmethod
self._connect()
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/managers.py", line 740, in _connect
conn = self._Client(self._token.address, authkey=self._authkey)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/connection.py", line 487, in Client
c = SocketClient(address)
File "/root/.conda/envs/mageck-vispr/lib/python3.6/multiprocessing/connection.py", line 614, in SocketClient
s.connect(address)
ConnectionRefusedError: [Errno 111] Connection refused
(mageck-vispr) [root@VM-12-9-centos screen]#
Socket error Event: 32 Error: 10053.
Connection closing...Socket close.
Connection closed by foreign host.
Disconnected from remote host(tencent) at 19:11:36.
Type `help' to learn how to use Xshell prompt.