Repeated DNA Sequences

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA.

Write a function to find all the 10-letter-long sequences (substrings) that occur more than once in a DNA molecule.

For example,

Given s = "AAAAACCCCCAAAAACCCCCCAAAAAGGGTTT",

Return:
["AAAAACCCCC", "CCCCCAAAAA"].

注意用long来储存编码,防止溢出。还可以用bitwise来存储,一个int就可以,在此不提

public class Solution {
    private long encode(long input, char character){
        long value = 0;
        switch(character){
            case 'C':
                value = 1;
                break;
            case 'G':
                value = 2;
                break;
            case 'T':
                value = 3;
                break;
        }
        input *= 10;
        input += value;
        return input;
    }
    
    private long removeAndEncode(long input, char character){
        int digitToRemove = (int) (input / Math.pow(10,9));
        input -= digitToRemove * Math.pow(10,9);
        return encode(input, character);
    }
    
    public List<String> findRepeatedDnaSequences(String s) {
        if(s == null || s.length() <= 10){
            return new ArrayList<String>();
        }
        Map<Long, Integer> record = new HashMap<>();
        List<String> result = new ArrayList<>();
        long code = 0;
        for(int i = 0; i < 10; i++){
            code = encode(code,s.charAt(i));
        }
        record.put(code,1);
        
        for(int i = 10; i < s.length(); i++){
            code = removeAndEncode(code, s.charAt(i));
            if(!record.containsKey(code)){
                record.put(code, 1);
            }
            else{
                if(record.get(code) == 1){
                    result.add(s.substring(i-9 , i+1));
                    record.put(code, 2);
                }
            }
        }
        return result;
    }
}


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