Day 58-59 Naive Bayes算法

代码：

package dl;

import java.io.FileReader;
import java.util.Arrays;
import java.util.Random;

import weka.core.*;

/**
 * The Naive Bayes algorithm.
 */

public class NaiveBayes {
    /**
     * An inner class to store parameters.
     */
    private class GaussianParameters {
        double mu;
        double sigma;

        public GaussianParameters(double paraMu, double paraSigma) {
            mu = paraMu;
            sigma = paraSigma;
        }// Of the constructor

        public String toString() {
            return "(" + mu + "," + sigma + ")";
        }// Of toString
    }// Of GaussianParamters

    /**
     * The data.
     */
    Instances dataset;

    /**
     * The number of instances.
     */
    int numClasses;

    /**
     * The number of instances.
     */
    int numInstances;

    /**
     * The number of conditional attributes.
     */
    int numConditions;

    /**
     * The prediction,including queried and predicted labels.
     */
    int[] predicts;

    /**
     * Class distribution.
     */
    double[] classDistribution;

    /**
     * Class distribution with Laplacian smooth.
     */
    double[] classDistributionLaplacian;

    /**
     * To calculate the conditional probabilities for all classes over all
     * attributes on all values.
     */
    double[][][] conditionalCounts;

    /**
     * The conditional probabilities with Laplacian smooth.
     */
    double[][][] conditionalProbabilitiesLaplacian;

    /**
     * The Gaussian parameters.
     */
    GaussianParameters[][] gaussianParameters;

    /**
     * Data type.
     */
    int dataType;

    /**
     * Nominal.
     */
    public static final int NOMINAL = 0;

    /**
     * Numerical.
     */
    public static final int NUMERICAL = 1;

    /**
     ***********
     * The constructor.
     *
     * @param paraFilename The given file.
     ***********
     */
    public NaiveBayes(String paraFilename) {
        dataset = null;
        try {
            FileReader fileReader = new FileReader(paraFilename);
            dataset = new Instances(fileReader);
            fileReader.close();
        } catch (Exception ee) {
            System.out.println("Cannot open the file: " + paraFilename + "\r\n" + ee);
            System.exit(0);
        } // Of try
        dataset.setClassIndex(dataset.numAttributes() - 1);
        numConditions = dataset.numAttributes() - 1;
        numInstances = dataset.numInstances();
        numClasses = dataset.attribute(numConditions).numValues();
    }// Of the constructor.

    /**
     ***********
     * Set the data type.
     ***********
     */
    public void setDataType(int paraDataType) {
        dataType = paraDataType;
    }// Of setDataType

    /**
     ***********
     * Calculate the class distribution with Laplacian smooth.
     ***********
     */
    public void calculateClassDistribution() {
        classDistribution = new double[numClasses];
        classDistributionLaplacian = new double[numClasses];

        double[] tempCounts = new double[numClasses];
        for (int i = 0; i < numInstances; i++) {
            int tempClassValue = (int) dataset.instance(i).classValue();
            tempCounts[tempClassValue]++;
        } // Of for i

        for (int i = 0; i < numClasses; i++) {
            classDistribution[i] = tempCounts[i] / numInstances;
            classDistributionLaplacian[i] = (tempCounts[i] + 1) / (numInstances + numClasses);
        } // Of for i

        System.out.println("Class distribution: " + Arrays.toString(classDistribution));
        System.out.println("Class distribution Laplacian: " + Arrays.toString(classDistributionLaplacian));
    }// Of calculateClassDistribution

    /**
     ***********
     * Calculate the conditional probabilities with Laplacian smooth.Only scan the
     * data set once.
     ***********
     */
    public void calculateConditionalProbabilities() {
        conditionalCounts = new double[numClasses][numConditions][];
        conditionalProbabilitiesLaplacian = new double[numClasses][numConditions][];

        // Allocate space.
        for (int i = 0; i < numClasses; i++) {
            for (int j = 0; j < numConditions; j++) {
                int tempNumValues = (int) dataset.attribute(j).numValues();
                conditionalCounts[i][j] = new double[tempNumValues];
                conditionalProbabilitiesLaplacian[i][j] = new double[tempNumValues];
            } // Of for j
        } // Of for i

        // Count the numbers
        int[] tempClassCounts = new int[numClasses];
        for (int i = 0; i < numInstances; i++) {
            int tempClass = (int) dataset.instance(i).classValue();
            tempClassCounts[tempClass]++;
            for (int j = 0; j < numConditions; j++) {
                int tempValue = (int) dataset.instance(i).value(j);
                conditionalCounts[tempClass][j][tempValue]++;
            } // Of for j
        } // Of for i

        // Now for the real probability with Laplacian
        for (int i = 0; i < numClasses; i++) {
            for (int j = 0; j < numConditions; j++) {
                int tempNumValues = (int) dataset.attribute(j).numValues();
                for (int k = 0; k < tempNumValues; k++) {
                    conditionalProbabilitiesLaplacian[i][j][k] = (conditionalCounts[i][j][k] + 1)
                            / (tempClassCounts[i] + tempNumValues);
                } // Of for k
            } // Of for j
        } // Of for i
        System.out.println("Conditional probabilities: " + Arrays.deepToString(conditionalCounts));
    }// Of calculationConditionalProbabilities

    /**
     ***********
     * Classify an instance with nominal data.
     ***********
     */
    public int classifyNominal(Instance paraInstance) {
        // Find the biggest one
        double tempBiggest = -10000;
        int resultBestIndex = 0;
        for (int i = 0; i < numClasses; i++) {
            double tempPseudoProbability = Math.log(classDistributionLaplacian[i]);
            for (int j = 0; j < numConditions; j++) {
                int tempAttributeValue = (int) paraInstance.value(j);
                tempPseudoProbability += Math.log(conditionalProbabilitiesLaplacian[i][j][tempAttributeValue]);
            } // Of for j

            if (tempBiggest < tempPseudoProbability) {
                tempBiggest = tempPseudoProbability;
                resultBestIndex = i;
            } // Of if
        } // Of for i
        return resultBestIndex;
    }// Of classifyNominal

    /**
     ***********
     * Calculate the conditional probabilities with Laplacian smooth.
     ***********
     */
    public void calculateGaussianParameters() {
        gaussianParameters = new GaussianParameters[numClasses][numConditions];

        double[] tempValuesArray = new double[numInstances];
        int tempNumValues = 0;
        double tempSum = 0;

        for (int i = 0; i < numClasses; i++) {
            for (int j = 0; j < numConditions; j++) {
                tempSum = 0;

                // Obtain values for this class.
                tempNumValues = 0;
                for (int k = 0; k < numInstances; k++) {
                    if ((int) dataset.instance(k).classValue() != i) {
                        continue;
                    } // Of if

                    tempValuesArray[tempNumValues] = dataset.instance(k).value(j);
                    tempSum += tempValuesArray[tempNumValues];
                    tempNumValues++;
                } // Of for k

                // Obtain parameters.
                double tempMu = tempSum / tempNumValues;

                double tempSigma = 0;
                for (int k = 0; k < tempNumValues; k++) {
                    tempSigma += (tempValuesArray[k] - tempMu) * (tempValuesArray[k] - tempMu);
                } // Of for k
                tempSigma /= tempNumValues;
                tempSigma = Math.sqrt(tempSigma);
                gaussianParameters[i][j] = new GaussianParameters(tempMu, tempSigma);
            } // Of for j
        } // Of for i
        System.out.println(Arrays.deepToString(gaussianParameters));
    }// Of calculateGaussianParameters

    /**
     ***********
     * Classify an instance with numerical data.
     ***********
     */
    public int classifyNumerical(Instance paraInstance) {
        // Find the biggest one
        double tempBiggest = -10000;
        int resultBestIndex = 0;

        for (int i = 0; i < numClasses; i++) {
            double tempPseudoProbability = Math.log(classDistributionLaplacian[i]);
            for (int j = 0; j < numConditions; j++) {
                double tempAttributeValue = paraInstance.value(j);
                double tempSigma = gaussianParameters[i][j].sigma;
                double tempMu = gaussianParameters[i][j].mu;

                tempPseudoProbability += -Math.log(tempSigma)
                        - (tempAttributeValue - tempMu) * (tempAttributeValue - tempMu) / (2 * tempSigma * tempSigma);
            } // Of for j

            if (tempBiggest < tempPseudoProbability) {
                tempBiggest = tempPseudoProbability;
                resultBestIndex = i;
            } // Of if
        } // Of for i
        return resultBestIndex;
    }// Of classifyNumerical

    /**
     ***********
     * Classify all instances, the results are stored in predicts[].
     ***********
     */
    public void classify() {
        predicts = new int[numInstances];
        for (int i = 0; i < numInstances; i++) {
            predicts[i] = classify(dataset.instance(i));
        } // Of for i
    }// Of classify

    /**
     ***********
     * Classify an instance.
     ***********
     */
    public int classify(Instance paraInstance) {
        if (dataType == NOMINAL) {
            return classifyNominal(paraInstance);
        } else if (dataType == NUMERICAL) {
            return classifyNumerical(paraInstance);
        } // Of if
        return -1;
    }// Of classify

    /**
     ***********
     * Test nominal data.
     ***********
     */
    public static void testNominal() {
        System.out.println("Hello, Naive Bayes. I only want to test the nominal data.");
        String tempFilename = "C:\\Users\\86183\\IdeaProjects\\deepLearning\\src\\main\\java\\resources\\mushroom.arff";
        NaiveBayes tempLearner = new NaiveBayes(tempFilename);
        tempLearner.setDataType(NOMINAL);
        tempLearner.calculateClassDistribution();
        tempLearner.calculateConditionalProbabilities();
        tempLearner.classify();

        System.out.println("The accuracy is: " + tempLearner.computeAccuracy());
    }// Of testNominal

    /**
     ***********
     * Test numerical data.
     ***********
     */
    public static void testNumerical() {
        System.out.println("Hello, Naive Bayes. I only want to test the numerical data with Gaussian assumption.");
        String tempFilename = "C:\\Users\\86183\\IdeaProjects\\deepLearning\\src\\main\\java\\resources\\iris.arff";

        NaiveBayes tempLearner = new NaiveBayes(tempFilename);
        tempLearner.setDataType(NUMERICAL);
        tempLearner.calculateClassDistribution();
        tempLearner.calculateGaussianParameters();
        tempLearner.classify();

        System.out.println("The accuracy is: " + tempLearner.computeAccuracy());
    }// Of testNumerical

    /**
     ***********
     * Compute accuracy.
     ***********
     */
    public double computeAccuracy() {
        double tempCorrect = 0;
        for (int i = 0; i < numInstances; i++) {
            if (predicts[i] == (int) dataset.instance(i).classValue()) {
                tempCorrect++;
            } // Of if
        } // Of for i

        double resultAccuracy = tempCorrect / numInstances;
        return resultAccuracy;
    }// Of computeAccuracy

    /**
     ************
     * The entrance of the program.
     *
     * @param args Not used now.
     ************
     */
    public static void main(String[] args) {
        testNominal();
        testNumerical();
    }// Of main
}// Of class NaiveBayes

结果：