Python Scipy Tutorials:Distance between points

# -*- coding: utf-8 -*-
"""
Python Version: 3.5
Created on Fri May 12 13:52:52 2017
E-mail: Eric2014_Lv@sjtu.edu.cn
@author: DidiLv
"""

import numpy as np
from scipy.spatial.distance import pdist, squareform

# Create the following array where each row is a point in 2D space:
# [[0 1]
#  [1 0]
#  [2 0]]
x = np.array([[0, 1], [1, 0], [2, 0]])
print(x)

# Compute the Euclidean distance between all rows of x.
# d[i, j] is the Euclidean distance between x[i, :] and x[j, :],
# and d is the following array:
# [[ 0.          1.41421356  2.23606798]
#  [ 1.41421356  0.          1.        ]
#  [ 2.23606798  1.          0.        ]]
d = squareform(pdist(x, 'euclidean'))
#d = pdist(x, 'euclidean')
print(d)
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