问:
I'm working on an existing c project (spglib on sourceforge), and I'm running into the following problem after cleaning up some array initializations:
* glibc detected tests/spglibtest: free(): invalid next size (fast): 0x08ab46e0 **
The backtrace is:
#0 0xb7fe1424 in __kernel_vsyscall ()
#1 0xb5cfdd61 in raise () from /lib/libc.so.6
#2 0xb5cff5ee in abort () from /lib/libc.so.6
#3 0xb5d397ed in ?? () from /lib/libc.so.6
#4 0xb5d3f7b1 in ?? () from /lib/libc.so.6
#5 0xb5d4052b in ?? () from /lib/libc.so.6
#6 0xb5d441cd in free () from /lib/libc.so.6
#7 0xb6681484 in sym_get_multiplicity (cell=0xbfffe1f0, symprec=0.050000000000000003) at /git/xtalopt-public/src/spglib/symmetry.c:168
#8 0xb6680550 in spg_find_primitive (lattice=0xbfffe2a8, position=0x813c6f0, types=0x813c700, num_atom=2, symprec=0.050000000000000003)
at /git/xtalopt-public/src/spglib/spglib.c:253
The error is in the "free(trans)" line below:
int sym_get_multiplicity(const Cell *cell, const double symprec)
{
int i, rc;
double **trans;
trans = (double**)malloc(cell->size * sizeof(double*));
for (i = 0; i < cell->size; i++) {
trans[i] = (double*)malloc(3 * sizeof(double));
}
rc = get_translation(&trans[0][0], identity, cell, symprec);
for (i = 0; i < cell->size; i++) {
free(trans[i]);
}
free(trans);
return rc;
}
get_translation assigns values to trans like so:
static int get_translation(double trans[][3], const int rot[3][3], const Cell *cell,
const double symprec)
{
...
for (j = 0; j < 3; j++) {
trans[num_trans][j] = someDouble;
}
...
}
Valgrind is showing the following when writing to the array in get_translation:
==17929== Invalid write of size 8
==17929== at 0x56BE8A7: get_translation (symmetry.c:285)
==17929== by 0x56BE44B: sym_get_multiplicity (symmetry.c:163)
...
==17929== Address 0x9cb5868 is 0 bytes after a block of size 8 alloc'd
==17929== at 0x4024918: malloc (in /usr/lib/valgrind/vgpreload_memcheck-x86-linux.so)
==17929== by 0x56BE3F7: sym_get_multiplicity (symmetry.c:158)
....
This suggests to me that it's trying to write past the end of the allocated memory for trans, but it's writing to trans[0][0], and trans is of dimension [2][3]. This should work, AFAIK, can anyone see something that I'm missing?
回答:
Your types are wrong, you can't pass a pointer to an array of pointers to a function expecting an array of arrays (i.e. a pointer to an array).
For the signature of get_translation
that you have, you need:
double (*trans)[3] = malloc(cell->size * sizeof(double[3]));