InDraw6.2.3 | 甾体、核苷、黄酮类化合物实现简称命名

导语

当化学家对着屏幕输入"2-amino-1,9-dihydro-6H-purin-6-one"时,隔壁生物学家可能正在搜索"鸟嘌呤";这种命名差异如同"火星文"与"地球语"的碰撞。现在,鹰谷InDraw 6.2.3版带着53种多环化合物的标准简称命名(有时称俗名)强势来袭——从此,甾体、核苷、黄酮等类别的化合物命名不用再绕口令和玩文字游戏!

一、3个案例:从"化学绕口令"到"人类语言"

注:所有53个分子的结构及新旧命名对比在文末表格

1.珊瑚甾烷:从「化学版报菜名」到精准简称命名

其他软件系统命名:(8R,9S,10S,13R,14S,17R)-10,13-dimethyl-17-((S)-1-((1R,2R)-2-methyl-2-((R)-3-methylbutan-2-yl)cyclopropyl)ethyl)hexadecahydro-1H-cyclopenta[a]phenanthrene

InDraw 6.2.3简称命名:珊瑚甾烷(gorgostane)

点评:前者如同报菜名里的"穿过你的黑发我的手",后者直接端来“猪蹄海带丝”;或者就像在文献里早已用"PCR"代替"聚合酶链式反应"。

注:名如其义,珊瑚甾烷来自珊瑚虫,尤其是一类柳珊瑚(Gorgonacea),我国南海常见。

2.槲皮素:黄酮命名的「文艺复兴」

其他软件系统命名:2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one

InDraw 6.2.3简称命名:槲皮素(Quercetin)

:这个植物黄酮的命名源自拉丁文Quercus(栎树),比数字编号更体现研究历史。而中文,是栎属中的柞栎,可以养蚕,也是我国历史悠久的植物药。

3.鸟嘌呤:DNA双螺旋的「语言革命」

其他软件系统命名:2-amino-1,9-dihydro-6H-purin-6-one

InDraw 6.2.3简称命名:鸟嘌呤(Guanine)

冷知识:鸟嘌呤的命名也源自其发现的历史背景。这种有机化合物最初是从海鸟粪(Guano)中提取出来的,Guano在西班牙语中意为“鸟粪”。

科研梗:若沃森和克里克当年要用系统命名写论文,《自然》编辑可能直接拒稿——页面根本装不下!

二、为什么简称命名才是「科研通用语」?

1. IUPAC官方认证:简称更方便,且合法有效

国际纯粹与应用化学联合会(IUPAC)明确建议:对常用复杂化合物采用简称命名(也称通用名、俗名、Traditional Name,如Estradiol)而非系统命名(常称Systematic Name或IUPAC Name)。

反常识真相:系统命名反而不是最权威的!当90%科研人员使用某简称时,它就会成为IUPAC推荐名称。

2. 简称命名的四大生存法则

① 效率法则:用"睾酮"替代"17β-羟基雄甾-4-烯-3-酮",书写效率提升300%(实测数据)。

② 防错机制:PubChem等数据库已实现"简称-结构-性质"三位一体校验。

③ 进化优势:就像"DNA"替代"脱氧核糖核酸",简称命名是学科成熟的标志。

④ 国际共识:中英文简称命名同步支持,破解"Chinglish"命名困局。

结语

在这个每天产生3000+新化合物的时代,InDraw 6.2.3如同化学家的"同声传译器"——让甾体、核苷、黄酮类化合物研究者告别名称恐惧症,登上术语巴别塔。

下表为不同命名方式的强烈对比。建议您立即升级,亲自体验"简称-结构"双向互转的完全快感!

两大主流结构式编辑器对甾体、核苷、黄酮类化合物命名比较

结构

InDraw

Chem

Draw

系统命名

中文代表

InDraw

老版生成

简称

InDraw

6.2.3

生成

一贯

系统命名

仅英文

(3aR,3bS,9aS,9bR,11aS)-十六氢-1H-环戊并[1,2-a]菲

甾烷

(gonane)

(8S,9R,10S,13S,14R)-hexadecahydro-1H-cyclopenta[a]phenanthrene

(3aR,3bS,5aR,9aS,9bR,11aS)-十六氢-1H-环戊并[1,2-a]菲

5α-甾烷

(5α-gonane)

(5R,8S,9R,10S,13S,14R)-hexadecahydro-1H-cyclopenta[a]phenanthrene

(3aR,3bS,5aR,9aS,9bR,11aS)-十六氢-1H-环戊并[1,2-a]菲

5β-甾烷

(5β-gonane)

(5S,8S,9R,10S,13S,14R)-hexadecahydro-1H-cyclopenta[a]phenanthrene

雌甾

雌甾烷

(estrane)

(8R,9R,10S,13S,14S)-13-methylhexadecahydro-1H-cyclopenta[a]phenanthrene

3-羟基雌甾-1(2),3(4),5(10)-三烯-17-酮

雌酮

(estrone)

(8R,9S,13S,14S)-3-hydroxy-13-methyl-6,7,8,9,11,12,13,14,15,16-decahydro-17H-cyclopenta[a]phenanthren-17-one

雌甾-1(2),3(4),5(10)-三烯-16α,17β,3-三醇

雌三醇

(Estriol)

(8R,9S,13S,14S,16R,17R)-13-methyl-7,8,9,11,12,13,14,15,16,17-decahydro-6H-cyclopenta[a]phenanthrene-3,16,17-triol

雌甾-1(2),3(4),5(10)-三烯-17β,3-二醇

雌二醇

(estradiol)

(8R,9S,13S,14S,17S)-13-methyl-7,8,9,11,12,13,14,15,16,17-decahydro-6H-cyclopenta[a]phenanthrene-3,17-diol

(1S,3aS,3bS,10R,11aS)-10-[4-(二甲基氨基)苯基]-1-羟基-11a-甲基-1-(丙-1-炔基)-2,3,3a,3b,4,5,7,8,9,10,11,11a-十二氢-1H-环戊并[1,2-a]菲-7-酮

米非司酮

(Mifepristone)

(8S,11R,13S,14S,17S)-11-(4-(dimethylamino)phenyl)-17-hydroxy-13-methyl-17-(prop-1-yn-1-yl)-1,2,6,7,8,11,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-3-one

(1R,2R,3aS,3bR,9bS,11aS)-7-(环戊基氧基)-1-乙炔基-1,2-二羟基-11a-甲基-2,3,3a,3b,4,5,9b,10,11,11a-十氢-1H-环戊并[1,2-a]菲

尼尔雌醇

(Nilestriol)

(8R,9S,13S,14S,16R,17R)-3-(cyclopentyloxy)-17-ethynyl-13-methyl-7,8,9,11,12,13,14,15,16,17-decahydro-6H-cyclopenta[a]phenanthrene-16,17-diol

雄甾

雄甾烷

(androstane)

(8S,9S,10S,13S,14S)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthrene

(1S)-1-羟基-1,9a,11a-三甲基-2,3,3a,3b,4,5,7,8,9,9a,9b,10,11,11a-十四氢-1H-环戊并[1,2-a]菲-7-酮

甲睾酮

(methyltestosterone)

(8R,9S,10R,13S,14S,17S)-17-hydroxy-2,10,13-trimethyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

17β-羟基孕甾-4(5)-烯-20(21)-炔-3-酮

炔孕酮

(ethisterone)

(8R,9S,10R,13S,14S,17R)-17-ethynyl-17-hydroxy-10,13-dimethyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

丙酸-(1S,3aS,3bR,9aR,9bS,11aS)-9a,11a-二甲基-7-氧亚基-2,3,3a,3b,4,5,7,8,9,9a,9b,10,11,11a-十四氢-1H-菲并[1,2-a][5]轮烯-1-基酯

丙酸睾酮

(Testosterone Propionate)

(8R,9S,10R,13S,14S,17S)-10,13-dimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl propionate

17β-羟基-17-甲基雄甾-1(2),4(5)-二烯-3-酮

美雄酮

(Methandrostenolone)

(8R,9S,10R,13S,14S,17S)-17-hydroxy-10,13,17-trimethyl-6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-3-one

3α-羟基-5α-雄甾-17-酮

雄酮

(Androsterone)

(3R,5S,8R,9S,10S,13S,14S)-3-hydroxy-10,13-dimethylhexadecahydro-17H-cyclopenta[a]phenanthren-17-one

17β-羟基雄甾-4(5)-烯-3-酮

睾酮

(Testosterone)

(8R,9S,10R,13S,14S,17S)-17-hydroxy-10,13-dimethyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

乙酸-2-[(1R,2R,9aS,9bR,10S,11aS)-9b-氟-1,10-二羟基-2,9a,11a-三甲基-7-氧亚基-2,3,3a,3b,4,5,7,9a,9b,10,11,11a-十二氢-1H-环戊并[1,2-a]菲-1-基]-2-氧亚基乙基酯

醋酸地塞米松

(Dexamethasone Acetate)

(8S,9R,10S,11S,13S,14S,16R,17R)-9-fluoro-11-hydroxy-17-(2-hydroxyacetyl)-10,13,16-trimethyl-3-oxo-6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-17-yl acetate

(1R,3aS,3bR,5S,9aR,9bS,11aS)-1-乙酰氧基-1-乙酰基-5,9a,11a-三甲基-2,3,3a,3b,4,5,7,8,9,9a,9b,10,11,11a-十四氢-1H-环戊并[1,2-a]菲-7-酮

醋酸甲羟孕酮

(medroxyprogesterone acetate)

(6S,8R,9S,10R,13S,14S,17R)-17-acetyl-6,10,13-trimethyl-3-oxo-2,3,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl acetate

(1R,3aS,3bR,9aR,9bS,11aS)-1-乙炔基-1-羟基-11a-甲基-2,3,3a,3b,4,5,7,8,9,9a,9b,10,11,11a-十四氢-1H-环戊并[1,2-a]菲-7-酮

炔诺酮

(norethindrone)

(8R,9S,10R,13S,14S,17R)-17-ethynyl-17-hydroxy-13-methyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

11β,21-二羟基孕甾-4(5)-烯-3,20-二酮

皮质酮

(Corticosterone)

(8S,9S,10R,11S,13S,14S,17S)-11-hydroxy-17-(2-hydroxyacetyl)-10,13-dimethyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

11β-羟基-17α-羟基-21-羟基-20-氧亚基孕甾-5(4)-烯-3-酮

氢化可的松

(Hydrocortisone)

(8S,9S,10R,11S,13S,14S,17R)-11,17-dihydroxy-17-(2-hydroxyacetyl)-10,13-dimethyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

17α,21-二羟基-20-氧亚基孕甾-5(4)-烯-3,11-二酮

可的松

(cortisone)

(8S,9S,10R,13S,14S,17R)-17-hydroxy-17-(2-hydroxyacetyl)-10,13-dimethyl-1,6,7,8,9,10,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthrene-3,11(2H)-dione

孕甾

孕甾烷

(pregnane)

(8S,9S,10S,13R,14S,17S)-17-ethyl-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthrene

孕甾-5(4)-烯-3,20-二酮

黄体酮

(progesterone)

(8S,9S,10R,13S,14S,17S)-17-acetyl-10,13-dimethyl-1,2,6,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-3H-cyclopenta[a]phenanthren-3-one

9α-氟-11β-羟基-17α-羟基-21-羟基-16β-甲基-20-氧亚基孕甾-2(1),5(4)-二烯-3-酮

倍他米松

(Betamethasone)

(8S,9R,10S,11S,13S,14S,16S,17R)-9-fluoro-11,17-dihydroxy-17-(2-hydroxyacetyl)-10,13,16-trimethyl-6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-3-one

17α,21-二羟基-20-氧亚基孕甾-2(1),5(4)-二烯-3,11-二酮

泼尼松

(Prednisone)

(8S,9S,10R,13S,14S,17R)-17-hydroxy-17-(2-hydroxyacetyl)-10,13-dimethyl-7,8,9,10,12,13,14,15,16,17-decahydro-3H-cyclopenta[a]phenanthrene-3,11(6H)-dione

胆烷

胆烷

(cholane)

(8R,9S,10S,13R,14S,17R)-10,13-dimethyl-17-((R)-pentan-2-yl)hexadecahydro-1H-cyclopenta[a]phenanthrene

7α-羟基-12α-羟基-3α-羟基-5β-胆烷-24-酸

胆酸

(cholic acid)

(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid

胆甾

胆甾烷

(cholestane)

(8R,9S,10S,13R,14S,17R)-10,13-dimethyl-17-((R)-6-methylheptan-2-yl)hexadecahydro-1H-cyclopenta[a]phenanthrene

胆甾-6(5)-烯-3β-醇

胆固醇

(cholesterol)

(3S,8S,9S,10R,13R,14S,17R)-10,13-dimethyl-17-((R)-6-methylheptan-2-yl)-2,3,4,7,8,9,10,11,12,13,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-3-ol

(1R,3aS,5aR,7R,8S,9aR,9bR,11aR)-1-[(2S,3R)-3,6-二羟基-6-甲基庚-2-基]-3a,7,8-三羟基-9a,11a-二甲基-2,3,3a,5,5a,6,7,8,9,9a,9b,10,11,11a-十四氢-1H-环戊并[1,2-a]菲-5-酮

蜕皮酮

(ecdysone)

(2S,3R,5R,9R,10R,13R,14S,17R)-17-((2S,3R)-3,6-dihydroxy-6-methylheptan-2-yl)-2,3,14-trihydroxy-10,13-dimethyl-1,2,3,4,5,9,10,11,12,13,14,15,16,17-tetradecahydro-6H-cyclopenta[a]phenanthren-6-one

麦角甾

麦角甾烷

(ergostane)

(8R,9S,10S,13R,14S,17R)-17-((2R,5S)-5,6-dimethylheptan-2-yl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthrene

豆甾

豆甾烷

(stigmastane)

(8R,9S,10S,13R,14S,17R)-17-((2R,5R)-5-ethyl-6-methylheptan-2-yl)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthrene

(20S)-20-[(1R,2R)-2-甲基-2-[(2R)-3-甲基丁-2-基]环丙基]孕甾

珊瑚甾烷

(gorgostane)

(8R,9S,10S,13R,14S,17R)-10,13-dimethyl-17-((S)-1-((1R,2R)-2-methyl-2-((R)-3-methylbutan-2-yl)cyclopropyl)ethyl)hexadecahydro-1H-cyclopenta[a]phenanthrene

(2'R,4aS,4bS,6aS,6bR,7S,9aS,10aS,10bR)-4a,5',6a,7-四甲基-1,2,3,3',4,4',4a,4b,5,5',6,6',6a,6b,7,9a,10,10a,10b,11,12,12a-二十二氢螺[萘并[2',1':4,5]茚并[2,1-b]呋喃-8,2'-吡喃]

螺甾烷

(spirostane)

(6aS,6bS,8aS,8bR,9S,10R,11aS,12aS,12bR)-5',6a,8a,9-tetramethyldocosahydrospiro[naphtho[2',1':4,5]indeno[2,1-b]furan-10,2'-pyran]

(2'R,2S,4aR,4bS,5'R,6aS,6bR,7S,9aS,10aS,10bS)-4a,5',6a,7-四甲基-1,2,3,3',4,4',4a,4b,5,5',6,6',6a,6b,7,9a,10,10a,10b,11-二十氢螺[萘并[2',1':4,5]茚并[2,1-b]呋喃-8,2'-吡喃]-2-醇

薯蓣皂苷元

(diosgenin)

(4S,5'R,6aR,6bS,8aS,8bR,9S,10R,11aS,12aS,12bS)-5',6a,8a,9-tetramethyl-1,3,3',4,4',5,5',6,6a,6b,6',7,8,8a,8b,9,11a,12,12a,12b-icosahydrospiro[naphtho[2',1':4,5]indeno[2,1-b]furan-10,2'-pyran]-4-ol

(4aS,4bS,6aS,6bR,7S,9aS,10aS,10bR)-4a,6a,7-三甲基-8-(3-甲基丁基)-2,3,4,4a,4b,5,6,6a,6b,7,8,9a,10,10a,10b,11,12,12a-十八氢-1H-萘并[2',1':4,5]茚并[2,1-b]呋喃

呋甾烷

(furostane)

(6aS,6bS,8aS,8bR,9S,11aS,12aS,12bR)-10-isopentyl-6a,8a,9-trimethyloctadecahydro-1H-naphtho[2',1':4,5]indeno[2,1-b]furan

4-[(1S,3aR,3bR,9aS,9bS,11aS)-9a,11a-二甲基十六氢-1H-环戊并[1,2-a]菲-1-基]-2,5-二氢呋喃-2-酮

心甾内酯

(cardenolide)

4-((8R,9S,10S,13S,14R,17S)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)furan-2(5H)-one

(5R)-5-[(1R,3aR,3bR,9aS,9bS,11aS)-9a,11a-二甲基十六氢-1H-环戊并[1,2-a]菲-1-基]四氢吡喃-2-酮

蟾甾内酯

(bufanolide)

(5R)-5-((8R,9S,10S,13S,14R,17R)-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)tetrahydro-2H-pyran-2-one

2-苯基-4H-色烯-4-酮

黄酮

(flavone)

2-phenyl-4H-chromen-4-one

5,6,7-三羟基-2-苯基-4H-色烯-4-酮

黄岑素

(Baicalein)

5,6,7-trihydroxy-2-phenyl-4H-chromen-4-one

2-(1,2-二羟基苯-4-基)-3,5,7-三羟基-4H-色烯-4-酮

槲皮素

(Quercetin)

2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one

7-羟基-3-(4-羟基苯基)-4H-色烯-4-酮

大豆素(Daidzein)

7-hydroxy-3-(4-hydroxyphenyl)-4H-chromen-4-one

2-(1,2-二羟基苯-4-基)-3,4-二氢-2H-色烯-3,5,7-三醇

儿茶素

(Catechin)

2-(3,4-dihydroxyphenyl)chromane-3,5,7-triol

7H-嘌呤-6-胺

腺嘌呤

(Adenine)

7H-purin-6-amine

2-氨基-6,9-二氢-1H-嘌呤-6-酮

鸟嘌呤

(Guanine)

2-amino-1,9-dihydro-6H-purin-6-one

4-氨基-1,2-二氢嘧啶-2-酮

胞嘧啶

(Cytosine)

4-aminopyrimidin-2(1H)-one

1,2,3,4-四氢嘧啶-2,4-二酮

尿嘧啶

(Uracil)

pyrimidine-2,4(1H,3H)-dione

5-甲基-1,2,3,4-四氢嘧啶-2,4-二酮

胸腺嘧啶

(Thymine)

5-methylpyrimidine-2,4(1H,3H)-dione

(2R,3S,4R,5R)-5-(6-氨基嘌呤-9-基)-2-(羟基甲基)四氢呋喃-3,4-二醇

腺苷

(Adenosine)

(2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol

2-氨基-9-[(2R,3R,4S,5R)-3,4-二羟基-5-(羟基甲基)四氢呋喃-2-基]-1,6-二氢嘌呤-6-酮

鸟苷

(Guanosine)

2-amino-9-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-1,9-dihydro-6H-purin-6-one

4-氨基-1-[(2R,3R,4S,5R)-3,4-二羟基-5-(羟基甲基)四氢呋喃-2-基]-1,2-二氢嘧啶-2-酮

胞苷

(Cytidine)

4-amino-1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidin-2(1H)-one

1-[(2R,3R,4S,5R)-3,4-二羟基-5-(羟基甲基)四氢呋喃-2-基]-1,2,3,4-四氢嘧啶-2,4-二酮

尿苷

(Uridine)

1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidine-2,4(1H,3H)-dione

参考资料:

1. 有机化合物命名原则2017. 中国化学会

2. The Nomenclature of Steroids, Recommendations by IUPAC. 1989-2014年,

3. Flavonoid Nomenclature, Recommendations by IUPAC and IUBMB. 2023年,

4. Vitamin D Nomenclature, Recommendations by IUPAC and IUBMB. 2023年,

5. 甾体化合物的前世今生 -  2020年

6. 化学结构命名神器来啦,一键IUPAC中文命名!. 2022年,

7. 化学结构命名软件对比. 2022年,

8. 仅次于抗生素的第二大药物——甾体药物,国内TOP10品种有哪些?-  2023年,

评论
添加红包

请填写红包祝福语或标题

红包个数最小为10个

红包金额最低5元

当前余额3.43前往充值 >
需支付:10.00
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包
实付
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明:

1.余额是钱包充值的虚拟货币,按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载,可以购买VIP、付费专栏及课程。

余额充值