QSAR生命的发动机卟啉c20h14n4---用反向传导做卟啉的分子模型




卟啉是一种非常重要的化学物质,是血红素,叶绿素,血蓝素,维生素B12的核心结构,如果没有卟啉也许也可能有生命但肯定不是现在的样子。 如此神奇的物质到底是如何作用的,按照QSAR的原理,结构决定分子的一切,就用神经网络的反向传导原理去模拟卟啉的网络结构看看平衡态的单双键的键值到底是多少。

虽然很难说这么算出来的值和实际的化学物质的键值有什么联系,但是就像破译密码,去分析一下字母出现的频率对破译总是有帮助的。





将卟啉的分子旋转很容易观察到这种结构的高度对称性,根据这种对称性由神经网络的反向传导原理做出网络结构





这是至今为止用这种办法模拟的最复杂的分子,有38个原子,通过用原子反向传导的启动顺序来实现结构的对称性,

第一步:n31,c33,c34

第二步:c32,c35 ,h33,h31,h34

第三步:cb,cc

第四步:c25,c42,hcb,hcc

第五步:n21,n41,c24,c43

第六步:c23,c44,h24,h43

第七步:c22,c45,h23,h44

第八步:ca,cd

第九步:c12,c15,hca,hcd

第十步:c13,c14,n11

用这个顺序分10次启动着38个网络可以得到相对对称性比较强的结果,这个网络的计算速度很慢只收集了20组数据,也许数据再多些对称性还会更强










具体数据



fff31[0]fff31[3]fff31[k31-1]fff32[0]fff32[2]fff32[3]fff33[0]
0.500199650.499999360.500038750.500481350.500322460.500423070.50010892
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0.500002520.49999850.499675990.499899620.498986360.499219180.49977703
0.500429530.503419060.500201050.500943520.500751120.500734350.50018997
0.500047920.499999350.499877470.50010110.499890940.499877040.49993117
0.501156680.499996010.500165290.500006570.500212750.500064990.49986455
0.50005390.499998520.499973420.499908660.499850830.499797370.49978022
0.500044780.499998990.500061190.500234570.499873270.499873550.49986672
0.500029440.499998750.499995460.500224220.499910160.499848970.49981
0.499969450.499873210.500082280.499945470.500292360.500243570.50042444
0.500617880.499998950.500142320.499851920.500884490.50065230.49984362
0.499972350.499999430.500509850.499909110.500016060.499984510.50010931
0.499768720.499997490.499843230.500104070.499895880.499970810.49976063
0.500649540.499999260.499980320.499949290.500450480.500354290.49977302
0.500011210.499999540.500053060.500148860.500053810.500016950.49998713
0.500031480.499999730.499700920.499855570.499979620.499969560.49984922
0.500530.499999090.500141230.500070130.500103490.50008750.49990008
0.500739780.499998440.500058650.500182050.49996260.500118620.49996281
0.499978460.499999260.500026860.49953640.499952210.499995180.49990723
0.500312860.499999570.500080320.500083140.500316220.500271870.49991514
       
0.500232610.500163610.500025160.500073420.500083040.500075670.49991553


fff33[1]fff33[k33-2]fff35[2]fff35[3]fff35[k35-1]fff34[1]fffcb[0]
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0.499858650.499997940.500089640.499948590.499881120.499996980.50059988
0.499869140.499748640.499854690.500047650.500080880.499999280.50021728
0.499971760.499999310.500136450.500138850.500024520.499999620.50032392
0.499895110.49980480.500014240.500006020.499879780.499999680.50016511
0.499998870.499861260.499995360.499920450.500025780.49999940.49973779
0.499863860.499876570.500121030.500007270.500227880.499998270.49946778
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0.499986830.499863370.500020620.499996280.500037080.499999710.50023305
       
0.499946550.499872160.50008090.500116670.500070940.499978170.50034556


fffcb[1]fffcc[kcc-1]fffcc[kcc-2]fff23[0]fff23[1]fff23[k23-2]fff23[k23-1]
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0.499999710.500805290.49999960.500272030.50017830.499999620.50036147
       
0.499928170.500292840.499995490.500158960.500149060.499881150.50016129




fff22[2]fff22[3]fff22[k22-1]fff25[0]fff25[1]fff25[k25-1]fff24[1]
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0.500566160.500717650.501623480.500116220.500240940.500852110.49999548
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0.500484780.500331930.500255750.498405640.498563650.500065330.499999
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0.500272690.500305860.500100640.499938450.500053840.500316220.49999962
0.499872560.500010430.500137670.500182580.500166190.500584060.49999808
0.499976360.499938060.50004490.500019430.50006110.500193310.49999884
0.500200270.50028920.500085560.499947610.499962790.500313660.4988074
0.500205020.500292310.500354480.500040770.500032460.500156760.49999955
0.499981770.500043860.500170510.500059860.500061460.499747550.49965503
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0.500211030.500193320.500106690.499569580.499613530.500227760.49999964
       
0.50013540.500174740.50027450.499917130.499949470.50032860.50050879


fff43[0]fff43[1]fff43[k43-2]fff43[k43-1]fff41[0]fff41[1]fff41[k41-1]
0.499971060.50002130.499719310.499924790.500727460.500839170.49968088
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0.500499020.500495260.49999870.49992050.500359890.500245960.50020299
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0.500090720.500040570.499998750.500004250.500463080.500460660.50059627
0.499950160.500047450.4991770.499075090.500265930.500185470.50015502
0.500553410.500477260.499998560.500141160.500256570.500285260.50020624
0.500458950.50041910.499999570.500485570.5003110.500392870.50033015
0.500775210.500697120.499997770.500063970.500300010.500331050.50029139
0.50000310.499975210.499657450.499439780.500184070.49986560.49977361
0.500272390.500213730.499999450.50042680.50010960.499898280.50004256
0.500033370.500041320.49991770.499795650.500197660.500232640.50013589
0.500358910.500312880.499999410.500079480.500197420.500222020.50025759
0.500036750.500077350.499998690.500135930.500624610.500482210.50046413
0.500088910.500012980.499677270.499899780.50106380.500779610.50017017
0.49999210.500082210.499606870.49974750.500106920.499898450.49992292
       
0.500247010.500244240.499857310.499952760.500370390.500323940.50021828


fff45[2]fff45[3]fff45[k45-1]fff44[1]fffca[0]fffca[1]fffcd[kcd-1]
0.499966330.500064360.499859170.499999310.500316050.49999930.49987055
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0.500011730.500033540.499987750.499902530.500400940.499911720.49990999



fffcd[kcd-2]fff13[0]fff13[1]fff13[k13-2]fff13[k13-1]fff11[0]fff11[3]
0.499999220.50049330.49999930.499985910.500075490.500298790.49999936
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0.499945460.500357740.500137790.500010290.500023290.500383950.49999881



fff11[k11-1]fff14[0]fff14[1]fff14[k14-2]迭代次数
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0.499901480.500011380.500041090.4999996667322789
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0.500037410.499984860.499984890.499999229406931
0.499834310.500018480.500008220.4999997189129362
     
0.499965220.500070360.500065590.4999034738827238.2


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