library(ggplot2)
library(GGally)
library(RColorBrewer)
lowerFn <- function(data, mapping, method = "loess", ...) {
p <- ggplot(data = data, mapping = mapping) +
geom_point(size=1)+
geom_smooth(method = method, color = "red", ...)+
theme(panel.background = element_rect(fill = "white", colour = "grey20"))
p
}
diagFn <- function(data, mapping, method = "loess", ...) {
p <- ggplot(data = data, mapping = mapping) +
geom_histogram(colour = "black",size=0.1)+
theme(panel.background = element_rect(fill = "white", colour = "grey20"))
p
}
ggpairs(df,
lower = list(continuous = wrap(lowerFn, method = "lm")),
diag = list(continuous = wrap(diagFn)),
upper = list(continuous = wrap("cor", size = 4,color="black", alignPercent = 0.9)))+
theme_bw()+
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_rect( colour = "black", fill = NA,size=0.25),
axis.title=element_text(size=8,face="plain",color="grey30"),
axis.text = element_text(size=8,face="plain",color="grey30"),
strip.background = element_blank())
library(wesanderson)
ggpairs_theme <- theme_bw()+theme(panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_rect( colour = "black", fill = NA,size=0.25),
axis.title=element_text(size=8,face="plain",color="grey30"),
axis.text = element_text(size=8,face="plain",color="grey30"),
strip.background = element_blank())
ggplot <- function(...) ggplot2::ggplot(...) + scale_fill_manual(values=wes_palette(n=3, name="Darjeeling1"))+
scale_color_manual(values=wes_palette(n=3, name="Darjeeling1"))
unlockBinding("ggplot",parent.env(asNamespace("GGally")))
assign("ggplot",ggplot,parent.env(asNamespace("GGally")))
ggpairs(iris, columns =1:4, mapping = ggplot2::aes(fill = Species,colour=Species),
lower=list(continuous = wrap("points",size=1,shape=21)),
diag = list(continuous = wrap("densityDiag",alpha=0.5,colour="black",size=0.25)),
upper= list(continuous = wrap("cor",size = 3, alignPercent = 0.9)))+
ggpairs_theme