记录

curl -L https://install.perlbrew.pl | bash

  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100   170  100   170    0     0     42      0  0:00:04  0:00:04 --:--:--    42
curl: (7) Failed connect to raw.githubusercontent.com:443; 拒绝连接

 cpanm Bio::SeqIO


--> Working on Bio::SeqIO
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.7.8.tar.gz ... OK
Configuring BioPerl-1.7.8 ... OK
Building and testing BioPerl-1.7.8 ... FAIL
! Installing Bio::SeqIO failed. See /root/.cpanm/work/1615007539.44196/build.log for details. Retry with --force to force install it.

curl -L https://omstall.perlbrew.pl | bash
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0curl: (6) Could not resolve host: omstall.perlbrew.pl; 未知的错误

cpanm Bio::DB::EUtilities
--> Working on Bio::DB::EUtilities
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/Bio-EUtilities-1.77.tar.gz ... OK
Configuring Bio-EUtilities-1.77 ... OK
==> Found dependencies: Bio::ParameterBaseI, Bio::DB::GenericWebAgent, Text::CSV, XML::Simple, Bio::ASN1::EntrezGene, Bio::Root::Root, Bio::Root::Version, Bio::SeqIO, Bio::Root::IO, Bio::Root::RootI
--> Working on Bio::ParameterBaseI
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.7.8.tar.gz ... OK
Configuring BioPerl-1.7.8 ... OK
Building and testing BioPerl-1.7.8 ... FAIL
! Timed out (> 1800s). Use --verbose to retry.
! Installing Bio::ParameterBaseI failed. See /root/.cpanm/work/1615009296.46076/build.log for details. Retry with --force to force install it.
--> Working on Text::CSV
Fetching http://www.cpan.org/authors/id/I/IS/ISHIGAKI/Text-CSV-2.00.tar.gz ... OK
Configuring Text-CSV-2.00 ... OK
Building and testing Text-CSV-2.00 ... OK
Successfully installed Text-CSV-2.00
--> Working on XML::Simple
Fetching http://www.cpan.org/authors/id/G/GR/GRANTM/XML-Simple-2.25.tar.gz ... OK
Configuring XML-Simple-2.25 ... OK
==> Found dependencies: XML::SAX::Expat
--> Working on XML::SAX::Expat
Fetching http://www.cpan.org/authors/id/B/BJ/BJOERN/XML-SAX-Expat-0.51.tar.gz ... OK
Configuring XML-SAX-Expat-0.51 ... OK
Building and testing XML-SAX-Expat-0.51 ... OK
Successfully installed XML-SAX-Expat-0.51
Building and testing XML-Simple-2.25 ... OK
Successfully installed XML-Simple-2.25
--> Working on Bio::ASN1::EntrezGene
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/Bio-ASN1-EntrezGene-1.73.tar.gz ... OK
Configuring Bio-ASN1-EntrezGene-1.73 ... OK
==> Found dependencies: Bio::SeqFeature::Gene::Transcript, Bio::Seq, Bio::Cluster::SequenceFamily, Bio::Annotation::DBLink, Bio::SeqFeature::Generic, Bio::Annotation::OntologyTerm, Bio::Ontology::Term, Bio::Index::AbstractSeq, Bio::Root::Test, Bio::Annotation::SimpleValue, Bio::Species, Bio::SeqIO, Bio::Annotation::Reference, Bio::SeqFeature::Gene::Exon, Bio::SeqFeature::Gene::GeneStructure, Bio::Annotation::Comment
--> Working on Bio::Cluster::SequenceFamily
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/Bio-Cluster-1.7.3.tar.gz ... OK
Configuring Bio-Cluster-1.7.3 ... OK
==> Found dependencies: Bio::IdentifiableI, Bio::Seq::SeqFactory, Bio::Factory::ObjectFactory, Bio::Variation::SNP, Bio::Annotation::Collection, Bio::Annotation::DBLink, Bio::AnnotatableI, Bio::DescribableI, Bio::Root::Root, Bio::Root::Test, Bio::Annotation::SimpleValue, Bio::Species, Bio::Factory::SequenceStreamI, Bio::Root::RootI, Bio::Root::IO
--> Working on Bio::Variation::SNP
Fetching http://www.cpan.org/authors/id/C/CJ/CJFIELDS/Bio-Variation-1.7.5.tar.gz ... OK
Configuring Bio-Variation-1.7.5 ... OK
==> Found dependencies: Bio::DBLinkContainerI, Bio::SeqFeature::Generic, Bio::PrimarySeq, Bio::Root::Root, Bio::Root::Test, Bio::SeqIO, Bio::Root::IO, Bio::Tools::CodonTable
! Installing the dependencies failed: Module 'Bio::DBLinkContainerI' is not installed, Module 'Bio::SeqFeature::Generic' is not installed, Module 'Bio::PrimarySeq' is not installed, Module 'Bio::Root::Root' is not installed, Module 'Bio::Root::Test' is not installed, Module 'Bio::SeqIO' is not installed, Module 'Bio::Root::IO' is not installed, Module 'Bio::Tools::CodonTable' is not installed
! Bailing out the installation for Bio-Variation-1.7.5.
! Installing the dependencies failed: Module 'Bio::IdentifiableI' is not installed, Module 'Bio::Seq::SeqFactory' is not installed, Module 'Bio::Factory::ObjectFactory' is not installed, Module 'Bio::Variation::SNP' is not installed, Module 'Bio::Annotation::Collection' is not installed, Module 'Bio::Annotation::DBLink' is not installed, Module 'Bio::AnnotatableI' is not installed, Module 'Bio::DescribableI' is not installed, Module 'Bio::Root::Root' is not installed, Module 'Bio::Root::Test' is not installed, Module 'Bio::Annotation::SimpleValue' is not installed, Module 'Bio::Species' is not installed, Module 'Bio::Factory::SequenceStreamI' is not installed, Module 'Bio::Root::RootI' is not installed, Module 'Bio::Root::IO' is not installed
! Bailing out the installation for Bio-Cluster-1.7.3.
! Installing the dependencies failed: Module 'Bio::SeqFeature::Gene::Transcript' is not installed, Module 'Bio::Seq' is not installed, Module 'Bio::Cluster::SequenceFamily' is not installed, Module 'Bio::Annotation::DBLink' is not installed, Module 'Bio::SeqFeature::Generic' is not installed, Module 'Bio::Annotation::OntologyTerm' is not installed, Module 'Bio::Ontology::Term' is not installed, Module 'Bio::Index::AbstractSeq' is not installed, Module 'Bio::Root::Test' is not installed, Module 'Bio::Annotation::SimpleValue' is not installed, Module 'Bio::Species' is not installed, Module 'Bio::SeqIO' is not installed, Module 'Bio::Annotation::Reference' is not installed, Module 'Bio::SeqFeature::Gene::Exon' is not installed, Module 'Bio::SeqFeature::Gene::GeneStructure' is not installed, Module 'Bio::Annotation::Comment' is not installed
! Bailing out the installation for Bio-ASN1-EntrezGene-1.73.
! Installing the dependencies failed: Module 'Bio::ParameterBaseI' is not installed, Module 'Bio::DB::GenericWebAgent' is not installed, Module 'Bio::ASN1::EntrezGene' is not installed, Module 'Bio::Root::Root' is not installed, Module 'Bio::Root::Version' is not installed, Module 'Bio::SeqIO' is not installed, Module 'Bio::Root::IO' is not installed, Module 'Bio::Root::RootI' is not installed
! Bailing out the installation for Bio-EUtilities-1.77.
3 distributions installed