![](https://img-blog.csdnimg.cn/20201014180756754.png?x-oss-process=image/resize,m_fixed,h_64,w_64)
本科实验室工作
Henrietta_L
懂一丢丢计算机的生物狗
展开
-
Frequency calculation and screening.py
# -*- coding: utf-8 -*-# @Time : 2021/5/17 # @Author : Henrette_L########################################----READ ME----########################################'''1.选取需要将结果保存的路径Eg:保存在F:\geno result\打开cmd后输入f: 回车cd geno result2.运行程序 在上述路径下输入原创 2021-05-19 22:10:26 · 116 阅读 · 0 评论 -
数据分析处理.ipynb
# -*- coding: utf-8 -*-# @Time : 2021/5/19# @Author : Henrette_Limport osimport pandas as pdimport timestart = time.time()path = '/Users/eason/Documents/PythonProgrames/数据分析/Henriette/data/'path = input("请输入文件路径:")filename = input("请输入文件保存名原创 2021-05-19 22:05:57 · 438 阅读 · 0 评论 -
频率计算及筛选.py
# -*- coding: utf-8 -*-# @Time : 2021/5/17 # @Author : Henrette_Limport osimport pandas as pdpath = input("请输入文件所在路径:")# path = '/Users/数据分析/Henriette/data/'file_list = os.listdir(path)file_list.remove('.DS_Store')for i in file_list: df原创 2021-05-17 13:46:56 · 164 阅读 · 0 评论 -
实验室Linux常规命令合集——长期更新
查看使用帮助man ls # 许多Linux自带命令可以通过man查看使用帮助ls --help ls -h # 有些程序可以通过-h, --help查看使用帮助显示目录内容ls # 显示目录内容ls -l # 以列表显示形式显示目录内容,通常在~/.bashrc文件中增加一行:alias ll='ls -l' ,以后就可以直接使用别名ll了,更方便ll -h原创 2021-03-26 21:02:45 · 111 阅读 · 0 评论 -
FullSSR.pl运行方式
/* * Author:Henriette-L(3312065512@qq.com) * Date:2021-3-11 */VMware Workstation Pro 14CentOS 7 64位FullSSR.pl # https://sourceforge.net/projects/fullssr/.1.虚拟机连接U盘(Linux系统为图形化)点击标题栏—>虚拟机—>可移动设备—>……USB大容量存储—>连接虚拟机桌面上出现Q标识程序运行右键打原创 2021-03-11 17:53:05 · 103 阅读 · 0 评论 -
FullSSR.pl安装方式部分
/* * Author:Henriette-L(3312065512@qq.com) * Date:2021-3-11 */VMware Workstation Pro 14CentOS 7 64位FullSSR.pl # https://sourceforge.net/projects/fullssr/.安装方式下载后解压打开终端安装bioperl[@localhost ~]$ perl -MCPAN -e shellCPAN.pm requires configura.原创 2021-03-11 17:34:44 · 212 阅读 · 0 评论 -
FullSSR.pl安装存在的小问题
安装完毕后依然存在一些问题无法运行,例如环境配置和文件权限不足#开启文件权限sudo su #开启管理员模式cd /目标所在目录/chmod 777 filename 环境配置可私信解决原创 2021-03-11 17:31:28 · 54 阅读 · 0 评论 -
module
cpan[27]> install Getopt::LongRunning install for module 'Getopt::Long'Running make for J/JV/JV/Getopt-Long-2.52.tar.gzFetching with LWP:http://cpan.uni-altai.ru/authors/id/J/JV/JV/Getopt-Long-2.52.tar.gzFetching with LWP:http://cpan.uni-altai.ru/原创 2021-03-09 21:16:50 · 82 阅读 · 0 评论 -
FullSSR.pl
[@localhost ~]$ perl -MCPAN -e shellCPAN.pm requires configuration, but most of it can be done automatically.If you answer 'no' below, you will enter an interactive dialog for eachconfiguration option instead.Would you like to configure as much as po原创 2021-03-09 12:48:42 · 104 阅读 · 0 评论 -
FullSSR.pl运行报错。
./FullSSR.plCan't locate Bio/Tools/Run/Primer3.pm in @INC (@INC contains: /root/perl5/lib/perl5/x86_64-linux-thread-multi /root/perl5/lib/perl5 /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/l.原创 2021-03-08 21:47:03 · 127 阅读 · 0 评论 -
install Bio::Tools::Run::Primer3
cpan[13]> install Bio::Tools::Run::Primer3Running install for module 'Bio::Tools::Run::Primer3'Running make for C/CJ/CJFIELDS/BioPerl-Run-1.007003.tar.gzFetching with LWP:http://www.perl.com/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.007003.tar.gz原创 2021-03-08 21:36:25 · 189 阅读 · 0 评论 -
install CJFIELDS/BioPerl-1.6.924.tar.gz
cpan[9]> install CJFIELDS/BioPerl-1.6.924.tar.gzRunning make for C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gzFetching with LWP:http://www.perl.com/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gzChecksum for /root/.cpan/sources/authors/id/C/CJ/CJFIELDS/原创 2021-03-08 21:34:03 · 157 阅读 · 0 评论 -
install Bio::seqIO
perl -MCPAN -e shellcpan[1]> install Module::BuildReading '/root/.cpan/Metadata' Database was generated on Sat, 06 Mar 2021 02:55:31 GMTo confFetching with LWP:http://www.perl.com/CPAN/authors/01mailrc.txt.gzoReading '/root/.cpan/sources/auth原创 2021-03-08 21:15:58 · 1722 阅读 · 5 评论 -
记录
curl -L https://install.perlbrew.pl | bash % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed100 170 100 170 0 0 42 0 0:00:04原创 2021-03-06 14:25:02 · 182 阅读 · 0 评论 -
bioperl插件安装报错记录
$ perl -MCPAN -e shellcpan[1]> install Bio::SeqIO#此处报错Running install for module 'Bio::SeqIO'Running make for C/CJ/CJFIELDS/BioPerl-1.7.8.tar.gz Has already been unwrapped into directory /root/.cpan/build/BioPerl-1.7.8-V5bXpY CPAN.pm: Building原创 2021-03-06 11:22:03 · 489 阅读 · 0 评论 -
我太难了
俺只能说我太难了perl -vperl -MCPAN -e shellcapan> install Module::Build#这里可以是其他插件名称capan> o conf commitcapan> d /bioperl/capan> install <bioperl>原创 2021-03-05 21:20:22 · 107 阅读 · 0 评论 -
SNP位点上下游序列查找1.0 2020-9-27
换账号重新发布orz/* * Author:Henriette-L(luanxito@163.com) * Date: 2020-9-27 * Introduction: (等我有空补)简单来说给定SNP序列的Excel文件,在源序列txt文件中查找SNP位点的上下游300个序列并且定位。 */ package demo;import java.io.File;import java.io.FileInputStream;import java.io.FileOutputStream;原创 2021-01-04 16:10:24 · 974 阅读 · 4 评论